PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF064300010CFD_t1
Common NameTRAES_3BF064300010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 491aa    MW: 52046.6 Da    PI: 9.0998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF064300010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-066385123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++Cgk F r  nL+ H r H
  TRAES3BF064300010CFD_t1 63 FVCEICGKGFQRDQNLQLHRRGH 85
                             89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-76285No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6146385IPR007087Zinc finger, C2H2
SMARTSM003550.0126385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355260104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.55E-7134159No hitNo description
SMARTSM00355210139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASEAMPNPF APLTNQPQQQ QPPSHEHPAA PPPKKKRNLP GTPDPDAEVI ALSPRTLMAT  60
NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LRQRSGKEPR KRVYVCPEKS CVHHNPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCAKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AEETARLTAA SSGAAVAAVP SMCGGGQGYL FARPNSMMLQ PPLTAHLKPA  240
AAGGQILGHA AGAVGDPLCD GAAARHGGLS LWGSDNTLPS SMGHHIGGLL SSGGGGTGAP  300
MPMQMYADLF APSSGAPPQF DMAQLSWLYG NNGGNGKLSS SNASELTTNS SREADSAPSV  360
FSGQQHAKPA AAPTDMSATA LLQRAAQIGS VTSSNTSMPL AGAFEQVPNS AGRIDERSKF  420
DDRALFGASQ HNANVPSAMG ELSAATGNVP YDVFSAARHA GLKDAVGREE TRDFLGVGMQ  480
ALCSSSINGW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35135202370Zinc finger protein JACKDAW
5b3h_F2e-35135202370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191248.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-131IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A077RZ980.0A0A077RZ98_WHEAT; Uncharacterized protein
TrEMBLA0A446PM410.0A0A446PM41_TRITD; Uncharacterized protein
STRINGMLOC_78652.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]