PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF063000030CFD_t1

Common Name

TRAES_3BF063000030CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 313aa MW: 34232.9 Da PI: 8.057

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF063000030CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	44	89	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ TRAES3BF063000030CFD_t1 44 RGHWRPAEDARLKELVGQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 89 899***************************.*********996 PP
2	Myb_DNA-binding	56	9.1e-18	96	140	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+++l a++ +G++ W++Iar ++ gRt++ +k++w+ + TRAES3BF063000030CFD_t1 96 RRAFTEEEEDRLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 140 678*****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.173	39	90	IPR017930	Myb domain
SMART	SM00717	3.4E-13	43	92	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.11E-28	44	137	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-15	44	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-26	45	97	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-12	47	88	No hit	No description
PROSITE profile	PS51294	27.155	91	145	IPR017930	Myb domain
SMART	SM00717	1.0E-14	95	143	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-15	96	140	IPR001005	SANT/Myb domain
CDD	cd00167	1.17E-11	98	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.3E-21	98	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0051782	Biological Process	negative regulation of cell division
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAREMNGFFS HPPPPPPAPY QEEAAADVDD AEDGGGGQGK LCSRGHWRPA EDARLKELVG 60 QYGPQNWNLI AEKLDGRSGK SCRLRWFNQL DPRINRRAFT EEEEDRLMAA HRAYGNKWAL 120 IARLFPGRTD NAVKNHWHVL MARRQREQSG AFRRRTKPAS ASSSSSIAPA PHYAGVVLQH 180 QHQYQHHGAS PIPMPLQPFA MGVAIATGMY SKAATATASR AYSGGESDES ASTCTTDLSL 240 SSGNAAVPCF YHHQGYDMAP QAHAVTQAFS PSARSAFSAP SSSSARRQQQ QHEEEDGDKL 300 SLPFFDFLGV GST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-32	44	144	7	107	B-MYB
1mse_C	3e-32	41	144	1	104	C-Myb DNA-Binding Domain
1msf_C	3e-32	41	144	1	104	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269\|PubMed:20305120}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00222	DAP	Transfer from AT1G69560	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding. {ECO:0000269\|PubMed:20305120}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187176.1	1e-177	transcriptional activator Myb-like
Swissprot	Q5NBM8	1e-93	CSA_ORYSJ; Transcription factor CSA
TrEMBL	A0A077RZI1	0.0	A0A077RZI1_WHEAT; Uncharacterized protein
STRING	Traes_3B_B7FFC33B1.1	1e-160	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-70	myb domain protein 105

Publications ? help Back to Top
Leonard LM,Follette VM Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications. Annu Rev Sex Res, 2002. 13: p. 346-88 [PMID:12836736] Wang L,Li X,Chen Z Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities. Int. J. Biol. Macromol., 2009. 44(2): p. 211-4 [PMID:19135473] Wang L,Huang H,Wei Y,Li X,Chen Z Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran. Int. J. Biol. Macromol., 2009. 45(4): p. 427-31 [PMID:19549538] Zhang H, et al. Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development. Plant Cell, 2010. 22(3): p. 672-89 [PMID:20305120] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang H, et al. Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81 [PMID:23256151] Zhu X, et al. Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein. Plant J., 2015. 82(4): p. 570-81 [PMID:25754973] Li X, et al. Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress. Plant Cell Environ., 2015. 38(10): p. 2171-92 [PMID:25828772] Shaar-Moshe L,Hübner S,Peleg Z Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach. BMC Plant Biol., 2015. 15: p. 111 [PMID:25935420]