PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF062000020CFD_t1 | ||||||||
Common Name | TRAES_3BF062000020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 23279.7 Da PI: 8.7361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.2 | 2.9e-18 | 28 | 164 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvka...eekewyfFskrdkkyatgkrknratk 79 +F+Pt++elv ++L+++++g +++ ++ e+d + + Pw+L + + + ++ + yfF+ r++ ++ + r++ TRAES3BF062000020CFD_t1 28 EFEPTEDELVLHFLRPQLRGFAPRVAGAVVEADPCAAPPWELLArxxpwellaR--HgllRRGHGYFFAARRRGKRAQARRTPEGG 111 7*********************9**999**************744677776542..123244477*****9998887777777778 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128 g+W ++g+ ++ +s ++ v + +++ y + a+ ++t Wvm ey++ TRAES3BF062000020CFD_t1 112 GGTWMHSGNREDRCSMTELGVVARWSMTRYclyrRDGAQGRRSTGWVMSEYEI 164 9********99999987777777777776655543444444689*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.611 | 23 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-13 | 27 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-24 | 28 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEEQGINLAG AGGGEVKQEV GEEEEEIEFE PTEDELVLHF LRPQLRGFAP RVAGAVVEAD 60 PCAAPPWELL ARXXPWELLA RHGLLRRGHG YFFAARRRGK RAQARRTPEG GGGTWMHSGN 120 REDRCSMTEL GVVARWSMTR YCLYRRDGAQ GRRSTGWVMS EYEITDPRCY RRADDGDEDQ 180 YWVLCHVRRS IRKNLKPRSR RR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 102 | ARRRGKRAQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201281.1 | 1e-110 | NAC transcription factor NAM-B1-like | ||||
TrEMBL | A0A077RR92 | 1e-143 | A0A077RR92_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_81739.1 | 1e-103 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Publications ? help Back to Top | |||
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