PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF061700120CFD_t1
Common NameTRAES_3BF061700120CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 391aa    MW: 44305.2 Da    PI: 7.7497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF061700120CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-076489126
                             TSSS-HHHHHHHHHHHHHTTTT-HHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWkt 26
                             +g+ T+eEde+++d+v ++G+  W+ 
  TRAES3BF061700120CFD_t1 64 KGPLTQEEDEKIIDLVSKYGPTKWSH 89
                             6899******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-43970IPR009057Homeodomain-like
PROSITE profilePS5129415.50859127IPR017930Myb domain
SuperFamilySSF466891.3E-1261155IPR009057Homeodomain-like
SMARTSM007170.07863125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-1171115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-10116157IPR009057Homeodomain-like
PROSITE profilePS500905.935124153IPR017877Myb-like domain
SMARTSM0071730128184IPR001005SANT/Myb domain
CDDcd001670.00212133154No hitNo description
SMARTSM002121.9E-32149274No hitNo description
CDDcd001956.55E-35156269No hitNo description
PROSITE profilePS5012724.166156263IPR000608Ubiquitin-conjugating enzyme E2
SuperFamilySSF544952.03E-35156275IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.108.3E-9158187IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.106.8E-33193274IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF001797.1E-21193268IPR000608Ubiquitin-conjugating enzyme E2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGCIVQPWIA HQPGMCFDDN PSRILLVPIF YTNVYLMAAE LFLNRTGVQY LHPWQKVLNP  60
ELIKGPLTQE EDEKIIDLVS KYGPTKWSHC KDLQKDPPTS CSAAELFLNR TGVQYLHPWQ  120
KVLNPELIKG PLTQEEDEKI IDLVSKYGPT KWSHCKDLQK DPPTSCSAGP VGEDMFHWQA  180
TIMGPSDARL LVVSFRTKVF HPNINNSNDN ICLDILKELW SPALIIFQVL LSICSLLMDP  240
NPDDPLVPEI THMYKTDQAK YESTARTWTQ KYATGGFIGK QCRERYEWLT SPLLVFGEAI  300
RPRFVPLILS RLANCQVQAH HAIPRLKTNQ LKWSFTSAFE ARQSLIVRGL FPMLADPRHL  360
AESTSTRNES VLKVALDHGK ASGVIKSHGL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x57_A1e-6015627542179Ubiquitin-conjugating enzyme E2 8
4x57_C1e-6015627542179Ubiquitin-conjugating enzyme E2 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-93HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077S0T70.0A0A077S0T7_WHEAT; Uncharacterized protein
STRINGEMT280051e-86(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-21Homeodomain-like protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]