PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF060500180CFD_t1
Common NameTRAES_3BF060500180CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 274aa    MW: 29134.4 Da    PI: 5.6872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF060500180CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09192235755
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++ + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  TRAES3BF060500180CFD_t1 192 AVAKVRRERISERLKVLQDLVPNG-----TKVDMVTMLEKAITYVKFLQ 235
                              56799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12187242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-13187239No hitNo description
SuperFamilySSF474593.79E-13188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6193235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MASKRATTRE LRAMYDDEPS SMSLELFGYH GVVVDGDDED DDTATALPQL SFVDNFKGGC  60
GSAADYYSWA YNASGGTPGA SSSSTSSVLS FEHAGGAGHQ LAYNSGTGDD DCALWMDSMA  120
DHQHGAARFG FMNPGSADVV PESQESSIKQ PAKSAQKRSS SGGEAQAAAK KQCGGGRKSK  180
AKVVPTKDPQ SAVAKVRRER ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV  240
LATDEFWPVQ GGKAPELSQV KTALDAILSS QQQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186198.11e-179transcription factor bHLH113-like
TrEMBLA0A077RP020.0A0A077RP02_WHEAT; Uncharacterized protein
STRINGTRIUR3_11692-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-47ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]