PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF060400040CFD_t1
Common NameTRAES_3BF060400040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 265aa    MW: 28905.5 Da    PI: 4.4953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF060400040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-1165113355
                              HHHHHH.HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahner.ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++n++ Er RR+r+N+++  +r ++P+      +K++Ka+i + Av YI +Lq
  TRAES3BF060400040CFD_t1  65 ASKNIVeERDRRRRLNEKLYAIRGVVPNI-----TKMDKASIIQDAVAYIEELQ 113
                              5555552799******************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-1262117No hitNo description
SuperFamilySSF474593.4E-1562129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.81863112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1465127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1169118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEGGMDASLD FLELEAHLVF DLGDADSSYL PAEDSLSGLD SSCYNDPTSS PDGATSSRST  60
ASTRASKNIV EERDRRRRLN EKLYAIRGVV PNITKMDKAS IIQDAVAYIE ELQEQERRIL  120
AEVSDLEAGS CTAVVVKSEA STGSEGVEDA GVGFSTRKKM RRTASSSIND TVTSPATHPI  180
LLELEVRPIA EKLAVMSMRH DNAQNVMAKM YKALDSLCLK VITSSVTVVD GRTVHTMFIE  240
TEEMDSVETI KEMVQAALSH LDFSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-146HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186745.11e-155transcription factor bHLH35-like
TrEMBLA0A077RTT70.0A0A077RTT7_WHEAT; Uncharacterized protein
STRINGTRIUR3_12568-P11e-154(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-37bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]