PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF060000010CFD_t1
Common NameTRAES_3BF060000010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 387aa    MW: 42571.1 Da    PI: 10.3617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF060000010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017326345323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C+ Cgk F  + +L++H++++
  TRAES3BF060000010CFD_t1 326 CSQCGKEF-KPQDLHSHMQSC 345
                              9*******.*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061361.1E-3520180IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEKGMDSYNK GGSAGEVRRI NVVYFLSRGG RTDHPHLFRV NNLHRSGVRL RDVKRWLSEV  60
RGKDMPENFS WAYKRKYKAG YVWQDLMDDD LITPISDNEY VLKGCDVRGT PPPSPCADAP  120
KPSSLADEKK LHRTEEKGRK QVEEELQVAP DSGESSPKPP PPIDQDSPSS EGEAAHFRIV  180
LPLDLQERKR RQQEAARRAA IDQQALVVRA AAAGGRKQQP AVGRARRMRV ARVLHSILTC  240
GAADSVDAAA LQPVALPRRS GGGSAGDDED GWRDTTPVCP GMDGCGIHMN RKVRLRRGGK  300
DKAKPEGGKR PGAVAAAHKP ASLPLCSQCG KEFKPQDLHS HMQSCRGFRA RMRSSNGTRG  360
MDKNHMRSAK TDNSSPERPS TGLLLTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150913.10.0uncharacterized protein LOC109736104
TrEMBLA0A077S4C20.0A0A077S4C2_WHEAT; Uncharacterized protein
STRINGEMT100740.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107941213
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]