PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF059600070CFD_t1 | ||||||||
Common Name | TRAES_3BF059600070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 31746.4 Da PI: 7.0877 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G tW+++a+ g++R++k+c++rw +yl TRAES3BF059600070CFD_t1 22 KGLWSPEEDERLYTRITRHGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 1e-12 | 77 | 127 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwq 45 + ++ E+e ++ + k lG++ +W+ Ia++m+ gRt++++k++w+ TRAES3BF059600070CFD_t1 77 PISKREEETIISLQKSLGNRrlnfheiciRWSVIAAKMP-GRTDNEIKNYWN 127 56889**********************************.***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.962 | 17 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-12 | 21 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.65E-24 | 21 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-10 | 25 | 69 | No hit | No description |
SMART | SM00717 | 8.2E-10 | 74 | 132 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.881 | 74 | 134 | IPR017930 | Myb domain |
CDD | cd00167 | 1.81E-8 | 77 | 127 | No hit | No description |
Pfam | PF00249 | 2.4E-10 | 77 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 77 | 133 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVEKPASQAD VGGEVEAHKE RKGLWSPEED ERLYTRITRH GVSTWSSVAQ LAGLRRSGKS 60 CRLRWMNYLR PDLKKEPISK REEETIISLQ KSLGNRRLNF HEICIRWSVI AAKMPGRTDN 120 EIKNYWNSRI RKRQNASPAG GKGDSGCAKQ QGDLPAADDK ASVLAGPRAK EPVSSMASGA 180 TAPPVPARFP LFACQLLGCG GGAAAIAAAG TTESTTTHEN NRAGSESDAS VGNGSGGGGD 240 GREGHYYYCA VDGDIDMIHL MSFDDLLEYP ASDLLMDAWD RNGLYSTNTG NSVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-21 | 22 | 133 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183575.1 | 1e-177 | myb-related protein 305-like | ||||
TrEMBL | A0A077RWG7 | 0.0 | A0A077RWG7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PER9 | 0.0 | A0A446PER9_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_3431FB444.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-43 | myb domain protein 86 |
Publications ? help Back to Top | |||
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