PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF058400020CFD_t1
Common NameTRAES_3BF058400020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 475aa    MW: 50759.5 Da    PI: 8.0452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF058400020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13325371455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  TRAES3BF058400020CFD_t1 325 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 371
                              799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-3940221IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16324376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-15324374No hitNo description
PfamPF000107.5E-11325371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-16327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSWSDTDAAL FAAVLGHDAA RHLATTPPHL DGPASSSPEL QARLCDLVER GGAWTYGIYW  60
QESRAGAGGR PVLGWGDGHC RDGPAEEARV TDRSLARKRA LLRLHALYGG GDDDGADYAL  120
RLDRVTGVEM YFLASMYFSF HEDAGGPGRA LTSGHHAWAT VDPHLPGSAA APGWYVRASL  180
AQSAGLRTIV FLPCKGGVLE LGSAVAMCEN PEVLRAIQSA FHVEAVAPDD RMRIFGKDVS  240
RSPPLPPVQT TGSDASWALR LGGQAMVATP AKQEVAAVKP KPQQEPPKTI SFSKAVDAQK  300
QAGGEERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPK ISKMDKASLL  360
SDAIAYIQEL EERLRGGAAG PAPARAETGP SVEVKTMQDE VVLRVSTPLE AHPISGALSA  420
MRDSQLSVVA SSMAVADDTV THTLVVRSAG PERLTAETVL AAISRGMMMS ATPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25319410283Transcription factor MYC2
5gnj_B2e-25319410283Transcription factor MYC2
5gnj_E2e-25319410283Transcription factor MYC2
5gnj_F2e-25319410283Transcription factor MYC2
5gnj_G2e-25319410283Transcription factor MYC2
5gnj_I2e-25319410283Transcription factor MYC2
5gnj_M2e-25319410283Transcription factor MYC2
5gnj_N2e-25319410283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306314RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183019.10.0transcription factor bHLH13-like
TrEMBLA0A077RYR30.0A0A077RYR3_WHEAT; Uncharacterized protein
TrEMBLA0A446PW210.0A0A446PW21_TRITD; Uncharacterized protein
STRINGMLOC_70409.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.15e-55bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]