PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF054400190CFD_t1 | ||||||||
Common Name | TRAES_3BF054400190CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 28032.6 Da PI: 10.6856 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.6 | 4.2e-22 | 35 | 115 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + r+v+p +f++++ g+ +++t++l +++g +++v++ +k+ ++ vl +GWk F++a++L++gDf+vFk+dg+s+ +v +f TRAES3BF054400190CFD_t1 35 FHERMVIPDRFVQHFRGQ--TGRTIKLASRHGYTFDVQI--TKNLEKLVLDSGWKAFARAHNLRTGDFLVFKYDGHSQL--KVLIF 114 4568********888888..4569***************..********************************997777..88777 PP - CS B3 98 r 98 TRAES3BF054400190CFD_t1 115 G 115 5 PP | |||||||
2 | B3 | 54 | 3.1e-17 | 151 | 231 | 17 | 100 |
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++k+ae + e+++ltl+ +g++Wev+++++k++ + +l+ GWk+F+++n+L+ gD+++F+l ++ ++ ++v+++rk TRAES3BF054400190CFD_t1 151 EISRKYAEVYlpF----EEQMLTLQ-HHGKKWEVRCRVKKSKAKRLLR-GWKHFARDNNLQLGDVCLFELLRNkKKYVMNVHIIRK 230 5778888777431....23356655.5*********988887776666.*********************9998999999999998 PP S CS B3 100 s 100 s TRAES3BF054400190CFD_t1 231 S 231 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-24 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-24 | 23 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.972 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.94E-22 | 25 | 114 | No hit | No description |
SMART | SM01019 | 1.0E-13 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-20 | 27 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.211 | 135 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-10 | 138 | 231 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-20 | 142 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 148 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-15 | 151 | 230 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-16 | 152 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MSKPWKKRKE LDEHRYWNHT GEQDKHFFKV MIGDFHERMV IPDRFVQHFR GQTGRTIKLA 60 SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HNLRTGDFLV FKYDGHSQLK VLIFGPSGCE 120 KIQACNLKKN AAPGKDWLAT PVNSYRYAFH EISRKYAEVY LPFEEQMLTL QHHGKKWEVR 180 CRVKKSKAKR LLRGWKHFAR DNNLQLGDVC LFELLRNKKK YVMNVHIIRK SLYKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-164 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162977.1 | 3e-89 | putative B3 domain-containing protein Os03g0621600 | ||||
Swissprot | Q851V5 | 2e-43 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A077S7T8 | 1e-175 | A0A077S7T8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QD50 | 1e-175 | A0A446QD50_TRITD; Uncharacterized protein | ||||
STRING | EMT28380 | 2e-91 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31680.1 | 1e-22 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|