PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF048900180CFD_t1 | ||||||||
Common Name | TRAES_3BF048900180CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 741aa MW: 84709 Da PI: 7.034 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51 | 2.6e-16 | 12 | 107 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 fkvl ++ +rl +p++f+ + g++ ++++ +l+ ++g++W v+l +k ++ ++lt+GW +Fv +n L+e +f++ TRAES3BF048900180CFD_t1 12 FKVL--VGDFA-RRLEIPRDFLG-YipevglRGSNISPVQAMLKRPEGKTWVVEL--EKVDRCVFLTTGWPKFVVDNSLREYEFLL 91 5555..33444.4699*****95.559999955557999****************..999999*********************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F++d++++f +v++f + TRAES3BF048900180CFD_t1 92 FRHDKKMDF--MVSIFGR 107 **9999999..***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-19 | 4 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-21 | 7 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.816 | 8 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.39E-16 | 9 | 105 | No hit | No description |
SMART | SM01019 | 1.9E-17 | 11 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 13 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MEEDEEGRPR FFKVLVGDFA RRLEIPRDFL GYIPEVGLRG SNISPVQAML KRPEGKTWVV 60 ELEKVDRCVF LTTGWPKFVV DNSLREYEFL LFRHDKKMDF MVSIFGRNAC EKAVRSSGSA 120 TESLERILPT CKRGHSGDEL TKTTNNLRQS HSLVMVPDQS DTKIFPFQGS TQGNGHISPQ 180 SFADIHLHEV DGLKDELKIY LLLKVPMDDD KAKVIAEVMS RLHVDRATVD LFCATLCLYK 240 WDSDAAAEVL NTCRGKPQIP NQFLKQKLVL QLDFIKRELR HFFPTGDDCP PQICDSRESS 300 LEEPNLSTQA LQIYLPAVKS KLVDDHELCD LSYKQKRRIV KSRSQQISET PRRSPRLAHL 360 KNSGGSIDSG LKEKPEVLES SPSSRIDQVE HRAGHACLLY EKPEHVLKGD RQHAIGSLSQ 420 DFKRLKRTRG EVSLSKKPQH NQENEEKIDQ GNNGEIFEEQ VDRNAAESSE LFMGRDWIDS 480 SPPTKSKLSS MIINELSLTW KPSVHTNSLE TVLLHIQRDN FMKTITHVQG IICSSPSDLH 540 CAAIIEAVVQ KEILKWDSCL QDVDAQRVVI ALLEHAKKIK EIHNFNMESR KEEFSTKLQD 600 QLKWQLKELE SACTSLEFDY KKVTCDGNIA VSTSQEQKKK LHALQDEIKG LQQSMMMEDE 660 IQKLVHQVAE HESLVQKSLM ERVRVKTVLK SYKQVLAEVK ERLASDELRL IDVDALVKVE 720 MDNLRKEIEI SKGRLLNIIF K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165473.1 | 0.0 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | Q5JNA1 | 0.0 | Y1237_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A077RV16 | 0.0 | A0A077RV16_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_7B2F14FB6.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13235 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 3e-14 | B3 family protein |
Publications ? help Back to Top | |||
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