PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF048900050CFD_t1
Common NameTRAES_3BF048900050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24185.7 Da    PI: 9.529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF048900050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-22957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             kri+n ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  TRAES3BF048900050CFD_t1  9 KRIDNPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYQY 57
                             79*********************************************99 PP
2K-box32.73.2e-1272169198
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              y++++++++++   ++ + el+k+ k  + L++e+R +  +d e+ s+  L  Le++Le ++ k+Rs K++ +  ++++l ++ + 
  TRAES3BF048900050CFD_t1  72 YEAATHTKVWSDIRQERRAELEKVAKMCDLLEKELRFMTVDDGEQYSVPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENMIRG 157
                              566778889***********************************************************************999998 PP

                    K-box  87 lqeenkaLrkkl 98 
                               q e   L  kl
  TRAES3BF048900050CFD_t1 158 KQAERYGLCDKL 169
                              888887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.146161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-26294IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-233859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1384169IPR002487Transcription factor, K-box
PROSITE profilePS5129710.37585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP  60
TVPSVKEFVE RYEAATHTKV WSDIRQERRA ELEKVAKMCD LLEKELRFMT VDDGEQYSVP  120
SLAALEHNLE AAMHKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKVVEG  180
GSTSLNNGLD LKLGRFSQSI QNLGTVQVSR SQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15190195MEF2 CHIMERA
6byy_B2e-15190195MEF2 CHIMERA
6byy_C2e-15190195MEF2 CHIMERA
6byy_D2e-15190195MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9233960.0DQ923396.1 Triticum aestivum MADS1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182424.11e-141MADS-box transcription factor 32
SwissprotQ8S1511e-122MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A077RV281e-156A0A077RV28_WHEAT; Uncharacterized protein
STRINGEMT114391e-149(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-23MIKC_MADS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  3. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]