PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF043700270CFD_t1 | ||||||||
Common Name | TRAES_3BF043700270CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13998 Da PI: 10.6051 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.7e-15 | 27 | 111 | 14 | 95 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 l +p +f ++hg +++ ++ +g++W+v l++ r +++ + l+ GW++F +ngL++gD++ F+l+++ + TRAES3BF043700270CFD_t1 27 EKLNVPVEFSQSHGFTEKGR--VV-LRMRGQQWTVCLKHsnR--RKGnartrTALRYGWNRFRVDNGLRVGDICFFQLVHDaGGDD 107 56899********8776553..44.45699*****9988652..333346779*************************99877777 PP .EEE CS B3 92 lvvk 95 +v++ TRAES3BF043700270CFD_t1 108 PVLS 111 7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.872 | 14 | 118 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.04E-15 | 15 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-21 | 15 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-6 | 16 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-12 | 27 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.56E-13 | 28 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MAQQLRDSPD LAGFQFYKLM AAGTSWEKLN VPVEFSQSHG FTEKGRVVLR MRGQQWTVCL 60 KHSNRRKGNA RTRTALRYGW NRFRVDNGLR VGDICFFQLV HDAGGDDPVL SVEVRKADGT 120 IVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-159 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172157.1 | 1e-61 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 1e-29 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A077S608 | 8e-87 | A0A077S608_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q734 | 8e-87 | A0A446Q734_TRITD; Uncharacterized protein | ||||
STRING | EMT23566 | 1e-61 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-10 | B3 family protein |
Publications ? help Back to Top | |||
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