PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF042100060CFD_t1
Common NameTRAES_3BF042100060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 472aa    MW: 51175.3 Da    PI: 8.4089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF042100060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-0581101323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C++Cgk F r  nL+ H r H
  TRAES3BF042100060CFD_t1  81 CEICGKGFQRDQNLQLHRRGH 101
                              *******************88 PP
2zf-C2H211.30.001156178123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H + +
  TRAES3BF042100060CFD_t1 156 WKCDKCSKKYAVQSDWKAHSKIC 178
                              58*****************9876 PP
3zf-C2H211.60.00083186204523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg++Fsr++++ +H   +
  TRAES3BF042100060CFD_t1 186 DCGTVFSRRDSFITHRAFC 204
                              9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-778101No hitNo description
PROSITE profilePS5015711.48979101IPR007087Zinc finger, C2H2
SMARTSM003550.07679101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355130121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-7151176No hitNo description
SMARTSM00355150156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MYHHHLQQQQ QRGESEAAAS ADQDSSMSNL TTSASAFANP PPPPTPASNK RKRSLPGNPD  60
PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKEVVRKKV  120
YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT  180
REYKCDCGTV FSRRDSFITH RAFCDALTEE SNKAISGGGL PLPPIAHAQH HAMLYSPHDL  240
MQQQHHHHHQ ELAAFQDQHH QVLQQHCNFD VKPEMQPWPT MPYDDVHHPL LQPLCSATAQ  300
SSATSVPTPT QQQQLPAAAA HLSATALLQK AAQMGATIGG AGAGGAGVHY TQMAGSATSA  360
TGSATFGLGL SCLSNQQMMS LARTASQGRS GEEGVASGGA NDGMTRDFLG LRAFSHRDIL  420
GLAGFDSSCM GAAVNTAGNN TNMAPCYEPK QQGQPPQQQN SNEPWHGMGS HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34152210361Zinc finger protein JACKDAW
5b3h_F5e-34152210361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118KLKQRGSKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094530.0BT009453.1 Triticum aestivum clone wlmk8.pk0027.b6:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184321.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-113IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A077RXA90.0A0A077RXA9_WHEAT; Uncharacterized protein
STRINGMLOC_57518.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.17e-95indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]