PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF039400040CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 95aa MW: 10879.8 Da PI: 10.018 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.8 | 6.2e-11 | 2 | 74 | 19 | 98 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 p +f++++ + +++ +l++ +g sW+v++ + g+++l +GW + +++k g +v+Fkl +l+v +f+ TRAES3BF039400040CFD_t1 2 PLDFTKHFVAV---PMEFKLRNNTGYSWKVTV--KLMNGKVTLDQGWATYTAVHQIKIGYMVTFKLLT--PNTLKVIIFD 74 66677555444...689***************..66666699***********************865..5556887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.815 | 1 | 76 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-8 | 2 | 74 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-12 | 6 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-12 | 6 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MPLDFTKHFV AVPMEFKLRN NTGYSWKVTV KLMNGKVTLD QGWATYTAVH QIKIGYMVTF 60 KLLTPNTLKV IIFDDDGIEV VSKCRKHDKA FAAKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-160 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146207.1 | 8e-54 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A3B6FXM7 | 2e-64 | A0A3B6FXM7_WHEAT; Uncharacterized protein | ||||
STRING | EMT06722 | 9e-54 | (Aegilops tauschii) | ||||
STRING | TRIUR3_20025-P1 | 8e-56 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17239 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 5e-07 | B3 family protein |
Publications ? help Back to Top | |||
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