PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF036800040CFD_t1 | ||||||||
Common Name | TRAES_3BF036800040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 451aa MW: 48093.3 Da PI: 7.8388 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 301 | 346 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI +L TRAES3BF036800040CFD_t1 301 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIPEL 346 799***********************66......***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.3E-39 | 40 | 215 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.526 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.86E-14 | 300 | 350 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 300 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-16 | 300 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 301 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-15 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MSWSDTDAAL FAAVLGHDAA RHLATTPPHL DGPASSSPEL QARLYDLVER GGAWTYGIYW 60 QESRAGAGVL GWGDGHCRDG PAEQAGATDR SLARKRALLR LHALYGGGDE DGADYALRLD 120 RVTGVEMYFL ASMYFSFRED AGGPGRALTS GHHAWAAVDP HLPGSPGWYV RASLAQSAGL 180 RTVVFLPCKG GVLELGSAVA MRENPEVLRA IQSAFHVESA SPDDHMRIFG KDVSRGSPMP 240 PLGAAAKQEV AAVVKPKPQQ EPPKTISFSN AVDAQKQAGG EERRPRKRGR KPANGREEPL 300 NHVEAERQRR EKLNQRFYAL RAVVPKISKM DKASLLSDAI AYIPELEERL RGGAAGPAPA 360 RAEAGPSVEV KAMQDEVVLR VSTPLDAHPI SGALSAMRDS QLSVVASSMA VADDTVTHTL 420 VVRSAGADRL TAETVLAAIS RGVMMSATPS P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_B | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_E | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_F | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_G | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_I | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_M | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
5gnj_N | 8e-25 | 295 | 350 | 2 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 290 | RRPRKRGRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183019.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A077S1T2 | 0.0 | A0A077S1T2_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_70409.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7385 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 2e-58 | bHLH family protein |
Publications ? help Back to Top | |||
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