PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF035700030CFD_t1 | ||||||||
Common Name | TRAES_3BF035300070CFD_c1, TRAES_3BF035700030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 23895.1 Da PI: 10.1714 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.6 | 1.9e-07 | 28 | 93 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as.............kapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P +s + ++ + + L A YIk+L+ TRAES3BF035700030CFD_t1 28 ERKDVEKNRRLHMKGLCLKLSSLVPAsPSsdhhlrhysssppSSNKDAATQLDQLDSAAAYIKQLR 93 56899*********************666***********96666666****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.623 | 24 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-10 | 26 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-9 | 26 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-4 | 28 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0054 | 30 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKSRRQSGRG GAMLLPDGNL HSSGSKMERK DVEKNRRLHM KGLCLKLSSL VPASPSSDHH 60 LRHYSSSPPS SNKDAATQLD QLDSAAAYIK QLRGRIDDLK RRKQAAVSGT AGCSSSISTG 120 DYKGAPSTAT TALPVIEVRH QDGTLDVALV SEVGRPFRLH EVIAVLEQEG AEVVSASFSV 180 VGDKIFYTVH SQALYPRIGL EAGRVAQGLR GLAAAAAVSP SVLLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183666.1 | 1e-124 | uncharacterized protein LOC109769325 | ||||
TrEMBL | A0A077RSZ7 | 1e-161 | A0A077RSZ7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_5D2D7A5A6.2 | 1e-151 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 9e-22 | bHLH family protein |
Publications ? help Back to Top | |||
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