PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035700030CFD_t1
Common NameTRAES_3BF035300070CFD_c1, TRAES_3BF035700030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 225aa    MW: 23895.1 Da    PI: 10.1714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035700030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-072893455
                             HHHHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPk.as.............kapskKlsKaeiLekAveYIksLq 55
                               + +E++RR +++    +L +l+P  +s             + ++   +  + L  A  YIk+L+
  TRAES3BF035700030CFD_t1 28 ERKDVEKNRRLHMKGLCLKLSSLVPAsPSsdhhlrhysssppSSNKDAATQLDQLDSAAAYIKQLR 93
                             56899*********************666***********96666666****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6232492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1026103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-926107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-42892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00543098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKSRRQSGRG GAMLLPDGNL HSSGSKMERK DVEKNRRLHM KGLCLKLSSL VPASPSSDHH  60
LRHYSSSPPS SNKDAATQLD QLDSAAAYIK QLRGRIDDLK RRKQAAVSGT AGCSSSISTG  120
DYKGAPSTAT TALPVIEVRH QDGTLDVALV SEVGRPFRLH EVIAVLEQEG AEVVSASFSV  180
VGDKIFYTVH SQALYPRIGL EAGRVAQGLR GLAAAAAVSP SVLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183666.11e-124uncharacterized protein LOC109769325
TrEMBLA0A077RSZ71e-161A0A077RSZ7_WHEAT; Uncharacterized protein
STRINGTraes_3B_5D2D7A5A6.21e-151(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-22bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]