PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF035700020CFD_t1 | ||||||||
Common Name | TRAES_3BF035300060CFD_c1, TRAES_3BF035700020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 23639 Da PI: 10.1419 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.6 | 4.4e-08 | 32 | 81 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ E+ RR+r++ ++L +l+Pk + ++++ ++ L A YIk+L TRAES3BF035700020CFD_t1 32 KKDSEKERRQRMKALCDKLASLIPKeD-NPHADTVTQLGSLDVAASYIKKL 81 5678*********************66.5555669999***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.048 | 27 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.72E-4 | 32 | 85 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 32 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-5 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-9 | 33 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-4 | 33 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEVKAKPARG GKRTRASVGT AGTPTEKLLM EKKDSEKERR QRMKALCDKL ASLIPKEDNP 60 HADTVTQLGS LDVAASYIKK LKERVDELQR KKASMQAMAT SRGVNDIRTP TTTTNTSSGA 120 GSLEGEKYLE ASPTVVEVRQ SDESSMEVRL ICSTKRPIKL HEVITIHEEE GADIVNANHS 180 VAGHKIFYTI HSRAFSTRIG IDVSRINERL RALV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 91 | KLKERVDELQRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183665.1 | 1e-131 | uncharacterized protein LOC109769324 | ||||
TrEMBL | A0A077RNT5 | 1e-155 | A0A077RNT5_WHEAT; Uncharacterized protein | ||||
STRING | TRIUR3_14870-P1 | 1e-133 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 4e-17 | bHLH family protein |
Publications ? help Back to Top | |||
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