PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF035300090CFD_t1 | ||||||||
Common Name | TRAES_3BF035300090CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 22548.6 Da PI: 9.7767 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25 | 3.3e-08 | 18 | 83 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas..............kapskKlsKaeiLekAveYIksLq 55 +e+E++RR +++ +L +l+P++s + ++ + + L A YIk+L+ TRAES3BF035300090CFD_t1 18 ERKEVEKNRRLHMKGLCLKLSSLVPSSSssdhhlrhysssppSSNKDAATQLDQLDSAAAYIKQLR 83 5789**********************666***********96666666****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.42 | 14 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-11 | 16 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-9 | 16 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-5 | 18 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0093 | 20 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAVDGSHTHT TSSGCKMERK EVEKNRRLHM KGLCLKLSSL VPSSSSSDHH LRHYSSSPPS 60 SNKDAATQLD QLDSAAAYIK QLRGRIHDLK RRKQAALSLS GGTGGCSSSV SAGDYKAHTT 120 TSLPVIEVRH QDGTLDVALA SEAGRPFRLH EVMAMLEQEG AEVVSASFSV VGDKIFYTLH 180 SQALCPRIGR VAQRLRGLAA AAAATVSTLL T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201035.1 | 1e-113 | uncharacterized protein LOC109786888 | ||||
TrEMBL | A0A3B6FEZ6 | 1e-151 | A0A3B6FEZ6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_612C9C78B.2 | 1e-151 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-13 | bHLH family protein |
Publications ? help Back to Top | |||
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