PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF035300050CFD_t1 | ||||||||
Common Name | TRAES_3BF035300050CFD_c1, TRAES_3BF035700010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23148.1 Da PI: 7.1288 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.4 | 1.1e-07 | 28 | 77 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e+Er RR++++ ++L +l+Pk + +++ ++ L + YIk+L TRAES3BF035300050CFD_t1 28 RKEAERERRQHMKALCAKLASLIPKeHF--SNPDtMTQLGSLDESASYIKKL 77 579**********************876..55555999999********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-9 | 17 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.645 | 23 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-12 | 28 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-5 | 29 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-6 | 29 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDVQAHEATG RMRGRASSGT TAARVVERKE AERERRQHMK ALCAKLASLI PKEHFSNPDT 60 MTQLGSLDES ASYIKKLKER VDELHHRRSS AKEMAAARGD SGASTPTTTP TTSGGAGSLE 120 REKHWEAWAP VLEVRQHDDT SLDVVLVCST ERPIMLHEVI TILEEEGAEV INANHSIAGH 180 KIFYTIHSQA FSSRIGIDVS SVSERLRALV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190842.1 | 1e-108 | uncharacterized protein LOC109776589 | ||||
TrEMBL | A0A077RR42 | 1e-152 | A0A077RR42_WHEAT; Uncharacterized protein | ||||
STRING | EMT33310 | 1e-107 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 3e-15 | bHLH family protein |
Publications ? help Back to Top | |||
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