PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF030200010CFD_t1
Common NameTRAES_3BF030200010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 279aa    MW: 30613.7 Da    PI: 8.5972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF030200010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.4e-08104151555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h  rEr RR+r+ ++++ +  llP+    ++    K  +L  Av+YI++L+
  TRAES3BF030200010CFD_t1 104 HITRERLRRERLSQGYADIHALLPPG---RASNGAKNCVLAAAVDYIRELE 151
                              889**********************8...89999999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.03999150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-11103166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5104151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9104166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNEWFFSVDR DDDDGLMGLM GLLSPPPAVV HQGSAFAPYQ RRSTATSSLL VSPGRRQRAR  60
GRANVHRSMD EYLRRMNGLE SSPQGTSSNE PIEPQVPRSS AFRHITRERL RRERLSQGYA  120
DIHALLPPGR ASNGAKNCVL AAAVDYIREL EGRKGRLDAR NAELVRSSES DGASGGGVVV  180
KVRGEGGYSS MAGVLEAVLR RLKAMEELRV TAIRSWCCDG AMCMDVAVAV ESKVSSFEAD  240
MRITNALMDL EEIKSCRSQD PMKRTSNFSC QVVSGELMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170577.11e-145transcription factor BHLH148-like
TrEMBLA0A077S3K40.0A0A077S3K4_WHEAT; Uncharacterized protein
STRINGEMT124261e-143(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]