PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF027700030CFD_t1
Common NameTRAES_3BF027700030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 426aa    MW: 46535.2 Da    PI: 4.4501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF027700030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM929.7e-29481822126
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk.sgyWka 85 
                               pG+rF Ptd+el+ +yL+ k++g++ ++ + +++ d+y  +P+ L +++  + +  wy F++r++kya+g r++r t  +g+Wk+
  TRAES3BF027700030CFD_t1  48 VPGVRFVPTDQELILCYLRSKLRGDPPPT-TLVHDDDVYAEHPQILTERLGPSVEdYWYVFTQRNRKYAKGGRPSRNTGdTGRWKS 132
                              59************************999.88**************96555544449*******************66549***** PP

                      NAM  86 tgkdkevlsk.kgelvglkktLvfy........kgrapkgektdWvmhey 126
                               gk+ +v+   +++++g +++L++         + ++++ ekt+W m e+
  TRAES3BF027700030CFD_t1 133 VGKNMPVTYGkEKATIGFRNSLAYEvflyddggDSKKKRIEKTEWKMAEF 182
                              *******98646777*******9987778877667888899********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3645211IPR003441NAC domain
PROSITE profilePS5100535.18847211IPR003441NAC domain
PfamPF023652.3E-1649182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDAVMLEAST SSTAMLEAPT SSTAMLLEAS TSSQQQSGEA ALYPYLHVPG VRFVPTDQEL  60
ILCYLRSKLR GDPPPTTLVH DDDVYAEHPQ ILTERLGPSV EDYWYVFTQR NRKYAKGGRP  120
SRNTGDTGRW KSVGKNMPVT YGKEKATIGF RNSLAYEVFL YDDGGDSKKK RIEKTEWKMA  180
EFVDVDSNMP VSSAPNFMLL NEWVLCRITR KPEKKKGEEE DPGASPADEV VEEEEGAEEE  240
HEPSSMMLVD EPLTDTSPDT SQQAQATASA GLLRNGANWS DSTADSQVEA SGSGADPQQT  300
ADDDPFESLD LGPLSSGNSL GHVFTIDPWA WNLYYPEGAD IDSSGSRLRT PSDPDPMETP  360
SEPPAAPQPR HFVTDLPSST DDGRLEHAKV IRKRKEDARA SGDDAGKKGN AAVKKSSGRA  420
KPDGQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-174921117168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077RW960.0A0A077RW96_WHEAT; Uncharacterized protein
TrEMBLA0A446Q2T50.0A0A446Q2T5_TRITD; Uncharacterized protein
STRINGEMT145690.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-22NAC domain containing protein 32
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]