PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF027700010CFD_t1 | ||||||||
Common Name | TRAES_3BF027700010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 552aa MW: 59830.4 Da PI: 4.9627 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l TRAES3BF027700010CFD_t1 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++ ++G++ W++ a++++ gRt++++k++w++ TRAES3BF027700010CFD_t1 96 KGAFTPEEERLIIQLHSKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF001693 | 6.5E-256 | 1 | 552 | IPR016310 | Transcription factor, GAMYB |
PROSITE profile | PS51294 | 16.625 | 38 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-31 | 40 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.68E-11 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 25.482 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-17 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 96 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 98 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-12 | 98 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MYRVKSESDC EMMHQEDQMD SPVGDDGSSG GSPHRGGGPP LKKGPWTSAE DAILVDYVKK 60 HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HSKMGNKWAR 120 MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SNEDQGSSDF NCGENLSSDL 180 LNGNGLYLPD FTCDNFIANS EALSYAPQLS AVSISSLLGQ SFASKNCGFM DQVNQAGMLK 240 QSDHLLPGLS DTINGALSSV DQFPNDSEKL KKALGFDYLH EANSSSKTIA PFGGALTGSH 300 AFLNGTFSTS RTINGPLKME LPSLQDTESD PNSWLKYTVA PAMQPTELVD PYLQSPTATP 360 SVKSECASPR NSGLLEELLH EAQGLRSGRN QQLSVRSSSS SVSTPCDTTV ISPEFDLCQE 420 YWEERLNEYA APFSGNSLTG STAPVSAASP DVFQLSKLSP AQSPSLGSGE QAMEPAYEPG 480 AGDTSSHPEN FRPDAFFSGN TTDSSVFNNA IAMLLGNDMN TDCKPVFGHG IVFDTSPWSN 540 MPHACQMSEE FK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-33 | 37 | 143 | 1 | 106 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951917 | 0.0 | JF951917.1 Triticum aestivum clone TaMYB34 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163715.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_020163716.1 | 0.0 | transcription factor GAMYB | ||||
Swissprot | A2WW87 | 0.0 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A3B6FRR4 | 0.0 | A0A3B6FRR4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_25320ED72.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-82 | myb domain protein 33 |
Publications ? help Back to Top | |||
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