PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF026500080CFD_t1 | ||||||||
Common Name | TRAES_3BF026500080CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 29352 Da PI: 6.6323 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde lv+ v++ G g+W+t +r+ g+ R++k+c++rw +yl TRAES3BF026500080CFD_t1 29 RGPWTAEEDEVLVRFVAREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 76 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 83 | 127 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++E++l++++++ lG++ W++Ia +++ gRt++++k++w+++l TRAES3BF026500080CFD_t1 83 GPIAEDEEDLILRLHRVLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 127 666799***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.305 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-29 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.94E-11 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 25.322 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-14 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 83 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-25 | 84 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-11 | 87 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MARRKPPAQH GARSEDGQAQ STAPPPLKRG PWTAEEDEVL VRFVAREGEG RWRTLPRRAG 60 LLRCGKSCRL RWMNYLRPDI KRGPIAEDEE DLILRLHRVL GNRWSLIAGR LPGRTDNEIK 120 NYWNSHLSKK LIAQGLDPRT HMPLAAAPGK TAAATHKTTA APVVVPPQPP PPPGPVLPTS 180 SAAGTGSDGH DNPGDGGNDD LAATMSVDAD GFEGFGDQLL ADYAASRGGF EDVMGCPMVD 240 DDTFTSFLDS LMNERQLAAD HKGVMNDQGG AI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 25 | 131 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376562 | 0.0 | AK376562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3127N16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181361.1 | 1e-157 | transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-74 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A077RTE8 | 0.0 | A0A077RTE8_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_16037.3 | 1e-154 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-70 | myb domain protein 5 |
Publications ? help Back to Top | |||
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