PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF024100110CFD_t1 | ||||||||
Common Name | TAA_ctg0091b.00070.1, TRAES_3BF024100110CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32892.8 Da PI: 6.2376 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.4e-14 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+ ++ +G g+W+ a g++Rt+k+c++rw++yl TRAES3BF024100110CFD_t1 29 RGPWTMEEDALLAGHIAAHGEGRWNELACAAGLRRTGKSCRLRWLNYL 76 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E++l+++++ ++G++ W++Iar+m+ gRt++++k++w++ TRAES3BF024100110CFD_t1 82 RGDFTPQEQLLILELHFRWGSR-WSRIAREMP-GRTDNEIKNYWRT 125 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.684 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-9 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-13 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-21 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.13E-7 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 20.877 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-14 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 82 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 84 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-10 | 85 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDAVWMGSCG WPAAAATTGG EQEAVDLRRG PWTMEEDALL AGHIAAHGEG RWNELACAAG 60 LRRTGKSCRL RWLNYLRPDV RRGDFTPQEQ LLILELHFRW GSRWSRIARE MPGRTDNEIK 120 NYWRTRVQKH AKQLKCDVDS RQFRDVMRHL WMPRLVERIQ AATAMPAPSL EHAASPVYPL 180 SVAPACRGGV GMCHSPETST VTTSSTAGSS VSLEVHFPSN QLVLTAGSGT NWSGSGSEQC 240 GSGSARSEDM FDGSWSELLA RACDDGADSV VFPDFELGES RDDKWSLEDI WLQHQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-23 | 26 | 129 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564428 | 0.0 | FN564428.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0091b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193528.1 | 1e-170 | transcription factor MYB108-like | ||||
TrEMBL | A0A3B6FUR6 | 0.0 | A0A3B6FUR6_WHEAT; Uncharacterized protein | ||||
TrEMBL | D8L9I2 | 0.0 | D8L9I2_WHEAT; Myb-like DNA-binding domain containing protein,expressed | ||||
STRING | Traes_3B_AA6863F0D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 4e-76 | myb domain protein 112 |
Publications ? help Back to Top | |||
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