PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF024100070CFD_t1
Common NameTRAES_3BF024100070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 350aa    MW: 37521.9 Da    PI: 10.1285
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF024100070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF231e-073067845
                             HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             nr   +  R++g++ KA+EL  + da vav+  + +g+
  TRAES3BF024100070CFD_t1 30 NRRMALEMRKAGLMNKAKELAEMADAPVAVLCSGLDGQ 67
                             89999999************************998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.94E-92994IPR002100Transcription factor, MADS-box
PfamPF003191.7E-53063IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3493060IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPRALGGKGR GRGGAPARPI AAIPVAVGVN RRMALEMRKA GLMNKAKELA EMADAPVAVL  60
CSGLDGQGAL QCWPSTETAR AVVGQFLELP KEARITFDQA SYIAGVRDAQ GSRLAGVRAG  120
GLAAALGPWE SPLDGMSEDA LRELLASVGK SLDATRSRIR RLQTQRRESV AENFVVAGEG  180
HASGEVQGTR RQPRGAATAP GAARKKQLVE DPKVKPAAAD GAARRKQLLK DPKEKPAAAD  240
GAARWKQLLK NHKEKPAAAA NVHAARRKQL LEGPKEKPVR AAPFDPGMIE YYINVGGCVM  300
ERDAYDFIRY DLGMLPPSLE PEPPEPDYDD PPRLWSWDDS SFPQSAPPPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644280.0FN564428.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0091b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077S6390.0A0A077S639_WHEAT; Uncharacterized protein
STRINGMLOC_66057.11e-150(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1587778
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]