PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF024100010CFD_t1 | ||||||||
Common Name | TAA_ctg0091b.00160.1, TRAES_3BF024100010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 465aa MW: 52576.6 Da PI: 4.5034 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 32.6 | 1.9e-10 | 28 | 96 | 3 | 81 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 e+ +flPia++ rim+k++P n+ i ++a qe v + d c+r + +++gddll +a+ Gf+ y + TRAES3BF024100010CFD_t1 28 ERGAFLPIADIRRIMRKAIPPNGEIDEEAA---QELVP-------EARGDGCKRARPEAMAGDDLLPEMAKQGFQAYPH 96 6789*********************99875...45444.......456799************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-5 | 28 | 60 | IPR009072 | Histone-fold |
SuperFamily | SSF81383 | 3.14E-10 | 114 | 173 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 7.5E-23 | 118 | 388 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50181 | 8.65 | 118 | 165 | IPR001810 | F-box domain |
Pfam | PF12937 | 3.1E-6 | 121 | 165 | IPR001810 | F-box domain |
SuperFamily | SSF52047 | 1.43E-7 | 203 | 289 | No hit | No description |
SuperFamily | SSF52047 | 1.43E-7 | 325 | 387 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016874 | Molecular Function | ligase activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MSNPPASPSG DVGSRISGSL AAGGSREERG AFLPIADIRR IMRKAIPPNG EIDEEAAQEL 60 VPEARGDGCK RARPEAMAGD DLLPEMAKQG FQAYPHKNRV ELPCTMEAEP NPLPVSDARD 120 WSELPLDALS AIFMKLGTIE ILMGAGLVCR SWLVAAKSPE LWRFVDMTRH KLVFSKGGNV 180 MYKMAKVAID RSDGRMESFW AQKFVTSELL NYIASRCNSL KSIRLIGAYY FWDDEDVVIK 240 LAAKCPMLEE IEYSGQKLTW DFFKGIGAAR PALKRLRVCL PWFDSDSIER EIRMEQRQND 300 EEEEEEEEEP YEAWEARHNE EAFAIAKSLH ELRLLQMAGY GLTKKGVYAI LEGCPHLEFL 360 DLRECGHLLV DAELKARCAN IKHVRLPGAW PHAHCPELDT IEEDEGEVIE MPNLYEIEAQ 420 ALHNEAAMDN DDYGENYWDD YSLPSPPGSP VPTYSMDDPR YYWEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371879 | 0.0 | AK371879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2142L07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155429.1 | 0.0 | putative F-box/LRR-repeat protein 23 | ||||
TrEMBL | D8L9I9 | 0.0 | D8L9I9_WHEAT; Ubiquitin-protein ligase, putative, expressed | ||||
STRING | Traes_3B_03BE0E869.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP548 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.6 | 1e-16 | nuclear factor Y, subunit B1 |
Publications ? help Back to Top | |||
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