PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF023000040CFD_t1
Common NameTRAES_3BF023000040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 755aa    MW: 81462.6 Da    PI: 7.705
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF023000040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-2190145156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              r++ +++t+eq++++e++F+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  TRAES3BF023000040CFD_t1  90 RKSYHRHTSEQVRVMEAVFKESPHPDEKQRQQLSKQLGLSPRQVKFWFQNRRTQIK 145
                              788999**********************************************9877 PP
2START1801.3e-562704962206
                              HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              la +a++el ++ +++ p+Wv+s+    +++n+de+++ f ++++        s+ea+r++gvv  ++++lv  ++d++ qW+e +
  TRAES3BF023000040CFD_t1 270 LAGSALEELKTMSSSGGPLWVRSVetgrDILNYDEYVRLFRRDDGpgdrrtgWSVEASRETGVVYLDATKLVHAFMDVN-QWKELF 354
                              788999************************************999*******9**************************.****99 PP

                              S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                    START  77 a....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                                   ka+tl+vi++g       g++qlm+ae q+l+p+vp R+f+f+Ry+++l a++w++vdvS d  +    +s++v + + pS
  TRAES3BF023000040CFD_t1 355 SsmisKASTLDVIRTGddddghdGVVQLMFAEVQMLTPMVPtREFYFARYCKKLAAEKWAVVDVSFDKAEADVGTSPLVTCWKNPS 440
                              99999****************************************************************99999************ PP

                              EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              g+++e+ +nghs+vtwveh+ +++  +++++r +  sgla+ga++wva lq qce+
  TRAES3BF023000040CFD_t1 441 GCIVEEQANGHSRVTWVEHTRCRECAVPSMYRAVTASGLAFGARRWVAQLQLQCER 496
                              ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2375141IPR009057Homeodomain-like
SuperFamilySSF466891.21E-2077148IPR009057Homeodomain-like
SMARTSM003891.3E-1986151IPR001356Homeobox domain
PROSITE profilePS5007118.28587147IPR001356Homeobox domain
CDDcd000862.79E-1990148No hitNo description
PfamPF000467.0E-1990145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084838.938260499IPR002913START domain
SuperFamilySSF559617.0E-27263496No hitNo description
CDDcd088753.07E-99264495No hitNo description
SMARTSM002341.2E-49269496IPR002913START domain
PfamPF018521.5E-45270496IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-6322479IPR023393START-like domain
SuperFamilySSF559613.43E-7554747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MGSSRPRTKD FFAAPTLSLS LAGAFARNAP SGDEVEEGEE GSGGVRSGPP GEEVEISSEN  60
TGPAGSQSGD GSAEEEEGHG DGGKRKKRSR KSYHRHTSEQ VRVMEAVFKE SPHPDEKQRQ  120
QLSKQLGLSP RQVKFWFQNR RTQIKATQER HENSLLKSEL ENLQKENRAM RQLAKGPSRC  180
PSCGAAAAST DGFNAAAANQ EQLLQLENAK LRAEVEKLRG ALGTAAADRA ASPASPPFSA  240
ATTQMSGNRS PFGVYGAGFV GRDRQSILEL AGSALEELKT MSSSGGPLWV RSVETGRDIL  300
NYDEYVRLFR RDDGPGDRRT GWSVEASRET GVVYLDATKL VHAFMDVNQW KELFSSMISK  360
ASTLDVIRTG DDDDGHDGVV QLMFAEVQML TPMVPTREFY FARYCKKLAA EKWAVVDVSF  420
DKAEADVGTS PLVTCWKNPS GCIVEEQANG HSRVTWVEHT RCRECAVPSM YRAVTASGLA  480
FGARRWVAQL QLQCERMVFW VATNVPTRDS NGVSTLAGRR SVLKLAHRMT LSLSRVIGGS  540
RCLAWSRAPR AGAGDVRLTS RTNAGDPGEP QGLIACAVLS TWLPVSPTSL LEFLRDESRR  600
PEWDVTLAGR AVQCRMNLTK GKDRCNCVTA YAPTSADGEW IVQDSCTNPC ESIVAYAPVD  660
AAVLQPVISG HDSSGVALLP CGFAVVPDGL ESRPAVITSR REGGAAAGSL VTVAFQVLAS  720
SSPAAALSPE SAETVTSLAS CTLRRVKKAL GCEDR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168333.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A446Q0160.0A0A446Q016_TRITD; Uncharacterized protein
STRINGTraes_3B_1E2F1C353.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]