PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF021600230CFD_t1
Common NameTRAES_3BF021600230CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 552aa    MW: 61378.9 Da    PI: 4.4806
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF021600230CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.22.6e-1301835522374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL++cA+a+++ +  +aqa+++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e+
  TRAES3BF021600230CFD_t1 183 KQLLFDCATALAEYNVDEAQAIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGTGIYKALTCKDPP---TLYQLSAMQILFEI 265
                              589*****************************************************************9...89999********* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P+++f++++aN aIlea +geer+HiiDfdi+qG Q+++L+q++ + +++p +lRiTgv+++e++      l+ +g+rL+k+Ae 
  TRAES3BF021600230CFD_t1 266 CPCYRFGFMAANYAILEACKGEERMHIIDFDINQGSQYITLMQSMKDDANKPRHLRITGVDDHETVqrTVGGLKVIGQRLEKLAED 351
                              **************************************************************9988778889************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              +g++fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf
  TRAES3BF021600230CFD_t1 352 CGISFEFRA-VGADIGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRF 436
                              *********.7999************************************************************************ PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               e  +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+s+++  ++++ll+ 
  TRAES3BF021600230CFD_t1 437 REVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFAPCPFSSNVIGEIRSLLSS 522
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + ++ y+ ee++g l +gW +++L+++SaW+
  TRAES3BF021600230CFD_t1 523 YCDR-YKFEEDHGGLHFGWGEKTLIVASAWQ 552
                              **66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.034156533IPR005202Transcription factor GRAS
PfamPF035149.0E-128183552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSFVGRVDPS TTYADNIYVH KFGAPNSNFA ARRFGSDTQL FRYGPEPFNS EDYGHMGFPE  60
APSAAFQNSF YNQQASLTPC SDATKDSPVC SNVSQQNSQS LSDNQSSGLE VEFDDEIRLK  120
LQELEHALLD DGDDILFEIS QAGCISDEWA DPMKDVLLAT SPKESESSIS CAGSNSGEAR  180
TPKQLLFDCA TALAEYNVDE AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG  240
IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEERM HIIDFDINQG  300
SQYITLMQSM KDDANKPRHL RITGVDDHET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA  360
VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM NERDQLLRMV KGLQPKLVTL  420
VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE  480
GPDRVERYEV AGKWRARMTM AGFAPCPFSS NVIGEIRSLL SSYCDRYKFE EDHGGLHFGW  540
GEKTLIVASA WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6218955125377Protein SCARECROW
5b3h_D4e-6218955125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496460.0AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172158.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A446Q8W50.0A0A446Q8W5_TRITD; Uncharacterized protein
TrEMBLW5CW280.0W5CW28_WHEAT; Uncharacterized protein
STRINGTraes_3B_5FFF6CB62.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]