PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF021600020CFD_t1 | ||||||||
Common Name | TRAES_3BF021600020CFD_c1, WPI2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24038.5 Da PI: 7.7611 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskR+ngilKKA+E+SvLCdaev v++fss gkly+++s TRAES3BF021600020CFD_t1 9 KRIENQSNRQVTFSKRKNGILKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.5 | 5.9e-25 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k++e++ + +++ ++ e+e TRAES3BF021600020CFD_t1 71 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQMEHYDRLVKHGKMLEDE 156 89999999*************************************************************************99999 PP K-box 87 lqeenkaLr 95 ++ + + TRAES3BF021600020CFD_t1 157 NKLLAFKVH 165 987766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.828 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-34 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.62E-42 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 7.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-16 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.552 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRGKIEIKR IENQSNRQVT FSKRKNGILK KAKEISVLCD AEVGVVVFSS AGKLYDFCSP 60 KTSLSRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GLTSLHEKQM EHYDRLVKHG KMLEDENKLL AFKVHQHDIA LSGSMRDLEL 180 GYHPDRDFAA QMPITFRVQP SHPNLQEDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-21 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB107992 | 0.0 | AB107992.1 Triticum aestivum WPI2 mRNA for PISTILLATA-like MADS box protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172714.1 | 1e-153 | MADS-box transcription factor 2 | ||||
Swissprot | Q40702 | 1e-138 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | Q76DP8 | 1e-153 | Q76DP8_WHEAT; PISTILLATA-like MADS box protein | ||||
STRING | MLOC_59262.2 | 1e-153 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-72 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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