PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF020100130CFD_t1
Common NameTRAES_3BF020100130CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 348aa    MW: 39890.9 Da    PI: 8.4205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF020100130CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51151431129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lp GfrFhPtd e+++ yL +kv +k++++ + + evd++k++Pw+Lp++++ +ekewyfFs++d+ky+tg r+nrat++gyWkat
  TRAES3BF020100130CFD_t1  15 LPSGFRFHPTDVEIITAYLVPKVLKKPFDT-REVGEVDLNKHDPWELPEMANMGEKEWYFFSQKDHKYPTGIRTNRATTAGYWKAT 99 
                              699**************************9.67***************9888999******************************* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+++  + +l+g+kktLvfykgra+kgekt+W+mheyrle
  TRAES3BF020100130CFD_t1 100 GKDKEIFHPpTMSLIGTKKTLVFYKGRAHKGEKTNWIMHEYRLE 143
                              ********988889****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-5610178IPR003441NAC domain
PROSITE profilePS5100554.77715178IPR003441NAC domain
PfamPF023654.3E-2616142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEKHLQVQQQ QQLKLPSGFR FHPTDVEIIT AYLVPKVLKK PFDTREVGEV DLNKHDPWEL  60
PEMANMGEKE WYFFSQKDHK YPTGIRTNRA TTAGYWKATG KDKEIFHPPT MSLIGTKKTL  120
VFYKGRAHKG EKTNWIMHEY RLERGKQPAP NLPTDITNTS TINASSKEEY VVCRIFHKSI  180
GLKKVVMSSF AMPMPMVVER QHGFLESITL PPLMDYNASS SLAPPLLVTA SSLYQLQATG  240
ASLSMMEGVF LPMMNGHYFG NHHHHQMMAV PPKPSIPFYH HQQQEQQQHQ MMQMGFMVRV  300
EPRSEPSSIV LQEDFLIALS KNDPGNDTTT TSDEIMSMNM GMDGMWKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4741843171NO APICAL MERISTEM PROTEIN
1ut4_B1e-4741843171NO APICAL MERISTEM PROTEIN
1ut7_A1e-4741843171NO APICAL MERISTEM PROTEIN
1ut7_B1e-4741843171NO APICAL MERISTEM PROTEIN
4dul_A1e-4741843171NAC domain-containing protein 19
4dul_B1e-4741843171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167840.11e-166protein CUP-SHAPED COTYLEDON 2-like
SwissprotQ9FLJ22e-73NC100_ARATH; NAC domain-containing protein 100
SwissprotQ9FLR32e-73NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A077RSL90.0A0A077RSL9_WHEAT; Uncharacterized protein
STRINGTraes_3B_DDC9F08B5.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.23e-74NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]