PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF020100090CFD_t1
Common NameTRAES_3BF020100090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 424aa    MW: 44959.8 Da    PI: 7.1779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF020100090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-053143521255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  TRAES3BF020100090CFD_t1 314 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 352
                              7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.039302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-5312356No hitNo description
SuperFamilySSF474595.23E-11312364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-9316359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MMASSSSSSD LSADHQLLQD DLPWPSSSLP PPLAPALHHA VGGNHHQWSQ PLMLEQLSSD  60
ELEALLSAQG HQHHSTHSQL LAAPLTTNPH HQLSSLLMMQ ELGFQWSSSC GTADGDSNET  120
AQDAVKEDAE LPGPLVLPRP SSSSSIAYDD DMAVDVLPSV NISRLQKIPC PVAAGPFGGR  180
AEATLEMLAS AKFCKSLLSC SQASSTVLLH NGGGTAPLLG MGGHHVAYGP PPPVHRLQGP  240
SSILHTYNKM GVPAALVSGN GSALQPAAGR SSGGGGLHDE QQLQVVAVSS KKKPRLLHSR  300
PATNNNILPS FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF LQDQVETLSG  360
PYMRSAKHKK ARTTQQRGPS DTGDQKEEAK VDLRSRGLCL VPLACTSYVT NENGIWAPPN  420
FRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153231.10.0uncharacterized protein LOC109738546
TrEMBLA0A446PFN00.0A0A446PFN0_TRITD; Uncharacterized protein
TrEMBLW5D5N10.0W5D5N1_WHEAT; Uncharacterized protein
STRINGTraes_3B_E70066CD3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-41bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]