PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF016200140CFD_t1 | ||||||||
Common Name | TRAES_3BF016200140CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 34424.6 Da PI: 6.8419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l + v+++ + +W t +++ g++R++k+c++rw++yl TRAES3BF016200140CFD_t1 14 RGPWSREEDAILRNFVQRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 42.6 | 1.4e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd l++ + G++ W+ Ia++++ gRt++++k++w++ TRAES3BF016200140CFD_t1 69 GGFTEEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.134 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.32E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.103 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGRSPCCDKA SVKRGPWSRE EDAILRNFVQ RFANAGNWIT LPQKAGLNRC GKSCRLRWLN 60 YLRPALRHGG FTEEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TKLKKRYYSL 120 TAAPSTPPTG GDAIASADSP HGVDQSSLPP PAPALVNLDA ALATVDDGGE LTHESEQLYA 180 ELMGLIEPQS TTHTSTGEVM SSPSSSSQPP FGASPTVSSF AAGSSATWPV DVHDTILWPE 240 SSGNGMVEFD DPCVAQAFGP PSMSHLLRCS GGLARRRSST GELWAEPTGS GLGRMWPSRP 300 SCVCACTYGT VLCWTRSEGK V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157086.1 | 1e-166 | transcription factor RAX2-like | ||||
TrEMBL | A0A077RU42 | 0.0 | A0A077RU42_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6FQJ5 | 0.0 | A0A3B6FQJ5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_2D2135570.1 | 1e-157 | (Triticum aestivum) | ||||
STRING | TRIUR3_25771-P1 | 1e-157 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-63 | MYB family protein |
Publications ? help Back to Top | |||
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