PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF016200140CFD_t1
Common NameTRAES_3BF016200140CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 321aa    MW: 34424.6 Da    PI: 6.8419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF016200140CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W+ eEd +l + v+++ +  +W t +++ g++R++k+c++rw++yl
  TRAES3BF016200140CFD_t1 14 RGPWSREEDAILRNFVQRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62
                             89******************999************************97 PP

2Myb_DNA-binding42.61.4e-1369111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +T+eEd l++ +    G++ W+ Ia++++ gRt++++k++w++
  TRAES3BF016200140CFD_t1  69 GGFTEEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111
                              569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.134962IPR017930Myb domain
SuperFamilySSF466891.32E-2611109IPR009057Homeodomain-like
SMARTSM007171.2E-81364IPR001005SANT/Myb domain
PfamPF002499.9E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201569IPR009057Homeodomain-like
CDDcd001671.49E-61662No hitNo description
PROSITE profilePS5129420.10363117IPR017930Myb domain
SMARTSM007172.6E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2170116IPR009057Homeodomain-like
CDDcd001671.57E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRSPCCDKA SVKRGPWSRE EDAILRNFVQ RFANAGNWIT LPQKAGLNRC GKSCRLRWLN  60
YLRPALRHGG FTEEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TKLKKRYYSL  120
TAAPSTPPTG GDAIASADSP HGVDQSSLPP PAPALVNLDA ALATVDDGGE LTHESEQLYA  180
ELMGLIEPQS TTHTSTGEVM SSPSSSSQPP FGASPTVSSF AAGSSATWPV DVHDTILWPE  240
SSGNGMVEFD DPCVAQAFGP PSMSHLLRCS GGLARRRSST GELWAEPTGS GLGRMWPSRP  300
SCVCACTYGT VLCWTRSEGK V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157086.11e-166transcription factor RAX2-like
TrEMBLA0A077RU420.0A0A077RU42_WHEAT; Uncharacterized protein
TrEMBLA0A3B6FQJ50.0A0A3B6FQJ5_WHEAT; Uncharacterized protein
STRINGTraes_3B_2D2135570.11e-157(Triticum aestivum)
STRINGTRIUR3_25771-P11e-157(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-63MYB family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]