PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF016200040CFD_t1 | ||||||||
Common Name | TRAES_3BF016200040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 388aa MW: 43065.7 Da PI: 10.3799 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.8 | 3.2e-21 | 19 | 118 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 ffkvl +k+ rl +p kf++++ +g ke s+ tle +sgr+W+v + r++ +++++t+GW +Fv+++ L+e + TRAES3BF016200040CFD_t1 19 FFKVL--IGDFKK-RLKIPPKFCKHIpweasrkaKGLKEASMAATLEGPSGRTWQVVI--RRTAEGTFFTAGWAKFVQDQALRELE 99 66666..555555.6********888********6666799*****************..************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 f+vF++dg ++f +vf+k TRAES3BF016200040CFD_t1 100 FLVFRHDGGTSF--AAMVFDK 118 *****9987777..7777766 PP | |||||||
2 | B3 | 50.8 | 3.1e-16 | 288 | 374 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ +v s ++++p f ++h ++e+++++l+d+ g+ W +i ++++r l++GW F++ n L+egD +vF+l+g ef TRAES3BF016200040CFD_t1 288 MSTMHVYYSFMMRFPTGFSRQHL--PREKTEMVLRDPGGKAWAALYI-PGTRDR--LSRGWCAFARGNCLEEGDCCVFELVGAAEF 368 6788999999*********9995..345679***************4.444445..9***********************997777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v+vfr TRAES3BF016200040CFD_t1 369 --RVHVFR 374 ..999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-21 | 14 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-20 | 16 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.717 | 16 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.39E-19 | 17 | 117 | No hit | No description |
SMART | SM01019 | 3.3E-11 | 19 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-18 | 19 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-23 | 277 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-21 | 277 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.39E-23 | 282 | 374 | No hit | No description |
SMART | SM01019 | 2.0E-9 | 284 | 376 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.437 | 284 | 376 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-15 | 286 | 374 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MPDTERQSPW ASVERRPHFF KVLIGDFKKR LKIPPKFCKH IPWEASRKAK GLKEASMAAT 60 LEGPSGRTWQ VVIRRTAEGT FFTAGWAKFV QDQALRELEF LVFRHDGGTS FAAMVFDKSA 120 CEREDLLLAG DAPRPRRKRG RPRTASRAVD DSAGMELVPY RAPAEQLPQV ACSDRMPESD 180 KSNGSAGHPG PMKAEAGAGE LPLCLIAPPP SESGQLPPGR LPAGTKDGCA VKTRSIHVDL 240 AAASIPPSVR KYNGYVSRRR PVASAERQRA MELARAFRSS LPYCVIRMST MHVYYSFMMR 300 FPTGFSRQHL PREKTEMVLR DPGGKAWAAL YIPGTRDRLS RGWCAFARGN CLEEGDCCVF 360 ELVGAAEFRV HVFRVVEPAV PAVRLRLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 137 | RPRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157089.1 | 0.0 | B3 domain-containing protein Os01g0723500-like | ||||
Swissprot | Q8S2E6 | 0.0 | Y1235_ORYSJ; B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | A0A077RU24 | 0.0 | A0A077RU24_WHEAT; Uncharacterized protein | ||||
STRING | Sb03g033260.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12792 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-26 | B3 family protein |
Publications ? help Back to Top | |||
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