PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF014900010CFD_t1
Common NameTRAES_3BF014900010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 450aa    MW: 47036.2 Da    PI: 6.8852
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF014900010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.6e-3483179283
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssase 72 
                              +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l  +                ++++s+
  TRAES3BF014900010CFD_t1  83 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDNLDTLpawqptavapaasnaAAPPSSS 168
                              79**************************************************************6666555544443332222222 PP

                      TCP  73 ceaesssssas 83 
                              ++++s  +s++
  TRAES3BF014900010CFD_t1 169 TQPDSADNSDD 179
                              22222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3183169IPR005333Transcription factor, TCP
PROSITE profilePS5136932.66985143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGDAGQSHHH HGLQTQLLSF GGAGSHHHHM HQFTAQAQPP AASQTRARGG RGGEMVPATP  60
ARVRGGGGGE IVAVQGGHIV RSTGRKDRHS KVCTARGPRD RRVRLSAHTA IQFYDVQDRL  120
GYDRPSKAVD WLIKNAKDAI DNLDTLPAWQ PTAVAPAASN AAAPPSSSTQ PDSADNSDDQ  180
AQAITIAHSS FDFAGSGGAG GATGGISFLP PSLDSDSIAD TIKSFFPMGG TTGGEPSSST  240
VAAHSSAMGF QGYTPDLLSR TGSQSQELRL SLQPLPDPMF HHHQQQEQHR SDGHDGNGTA  300
QQTLFPGAAS YSFGGGGAMW GEQAASQRMM PWNVPDPGGG STGGYLFNVS QQAAHMQAAL  360
SGQSQFFFQR GPLQSSNQPS DRGWPETVEA DDNNPMQQHQ GGLNPSVSAI GFGPGVSFSG  420
FRVPARMQGN EEHNGGNGDK PPSVSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2090143154Putative transcription factor PCF6
5zkt_B5e-2090143154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175459.10.0transcription factor PCF5-like
RefseqXP_020175460.10.0transcription factor PCF5-like
SwissprotQ8LT071e-178PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A077RQV40.0A0A077RQV4_WHEAT; Uncharacterized protein
STRINGTraes_3B_BE78EBA50.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-38TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]