PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF013700050CFD_t1 | ||||||||
Common Name | TRAES_3BF013700050CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | BES1 | ||||||||
Protein Properties | Length: 333aa MW: 35648.9 Da PI: 8.5878 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 204 | 4.5e-63 | 1 | 143 | 6 | 149 |
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 +ptw+ErEnnkrRERrRRaiaaki++GLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkg++p e+++ +g+s s sp+ TRAES3BF013700050CFD_t1 1 MPTWRERENNKRRERRRRAIAAKIFSGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGCRPAERMDGIGCSVSPSPC 86 69************************************************************************************ PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlslvsss 149 ss+q +sp++sy+asp+sssfps +s+ +++++++ + +lp+l++ s++++s TRAES3BF013700050CFD_t1 87 SSYQ--------PSPRASYNASPTSSSFPSGASSPFLPHSNNmvngvdaTPILPWLQTFSNSTAS 143 ****........99999999999999999999999999988889998889999999999887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.1E-62 | 1 | 137 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MPTWRERENN KRRERRRRAI AAKIFSGLRA HGGYKLPKHC DNNEVLKALC NEAGWVVEPD 60 GTTYRKGCRP AERMDGIGCS VSPSPCSSYQ PSPRASYNAS PTSSSFPSGA SSPFLPHSNN 120 MVNGVDATPI LPWLQTFSNS TASNKRPHLP PLLIHGGSIS APVTPPLSSP TARTPRMKTD 180 WDESVIQPPW HGSNSPCVVN STPPSPGRQM VPDPAWLAGI QISSTSPSSP TFSLMSSNPF 240 SVFKEAIPGG GSSRMCTPGQ SGTCSPVIPG MARHPDVHMM DVVSDEFAFG SSTNGGAQQA 300 TAGLVRAWEG ERIHEDSGSD ELELTLGSSR TRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-23 | 2 | 70 | 374 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-23 | 2 | 70 | 374 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-23 | 2 | 70 | 374 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-23 | 2 | 70 | 374 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252468 | 0.0 | AK252468.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf161n20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188462.1 | 0.0 | protein BZR1 homolog 2 | ||||
Swissprot | Q0JPT4 | 1e-171 | BZR2_ORYSJ; Protein BZR1 homolog 2 | ||||
TrEMBL | A0A3B6EEX6 | 0.0 | A0A3B6EEX6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AS_5A6A80EA5.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_3B_CC5045B61.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 3e-81 | BES1/BZR1 homolog 4 |
Publications ? help Back to Top | |||
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