PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF012200020CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28075.5 Da PI: 6.8901 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.9 | 1.3e-19 | 101 | 147 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++v ++G + W+tI ++++ gR +kqc++rw ++l TRAES3BF012200020CFD_t1 101 RGPWTEEEDELLRRLVDEHGEHKWATICKHLP-GRIGKQCRERWTNHL 147 89******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 21.5 | 5.5e-07 | 157 | 181 | 4 | 29 |
S-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIar 29 WT+ +d ll+da+k +G++ W tIa+ TRAES3BF012200020CFD_t1 157 WTEVDDILLIDAHKIHGNH-WLTIAS 181 *******************.****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.691 | 96 | 151 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 97 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-25 | 99 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-19 | 100 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-18 | 101 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-18 | 103 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 150 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 27 | 153 | 208 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00121 | 157 | 181 | No hit | No description |
PROSITE profile | PS50090 | 4.972 | 157 | 189 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASLGDMLLN QELAAEEYGR FERYTPSSAH GFSQFQQADS APTGVPDTGS LVSGFGMPPS 60 TFIVPEGTHA AAGYGAEAVP VEIPVVQRQR SASRNPQALH RGPWTEEEDE LLRRLVDEHG 120 EHKWATICKH LPGRIGKQCR ERWTNHLRPG IKKDHIWTEV DDILLIDAHK IHGNHWLTIA 180 SAGRLQPTRD GHVHPPSQRG CWIIVPGRDD EPELAVAGPQ RLRRRDAGAI LLSAPQQQQQ 240 HGAPWTRAGI SADV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 99 | 199 | 5 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163980.1 | 1e-108 | transcription factor MYB3R-1-like | ||||
TrEMBL | M8C1L2 | 1e-105 | M8C1L2_AEGTA; Transcription factor MYB98 | ||||
STRING | EMT27928 | 1e-106 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 4e-22 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
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