PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF012200010CFD_t1 | ||||||||
Common Name | TRAES_3BF012200010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 43175.3 Da PI: 7.4427 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.8 | 1.4e-19 | 90 | 135 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEdell ++v ++G + W+tI+++++ gR +kqc++rw ++ TRAES3BF012200010CFD_t1 90 RGPWTEEEDELLRRLVDEHGEHKWATISKHLP-GRIGKQCRERWTNH 135 89******************************.***********997 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 146 | 185 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ +d ll+da+k +G++ W+tIar+++ gR+++ +k++w+ TRAES3BF012200010CFD_t1 146 WTEADDILLIDAHKIHGNR-WSTIARCLP-GRSENAIKNHWN 185 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.655 | 85 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-19 | 89 | 138 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.31E-30 | 89 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 90 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-18 | 90 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-17 | 92 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 139 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.808 | 141 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 142 | 190 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-13 | 146 | 185 | No hit | No description |
Pfam | PF00249 | 5.7E-14 | 146 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MSADAYGRFE RYSMSSAHGF PQYQQAGNAP TGFPDTGFLV SGFGKPPTIF IMPAGTHAAA 60 GYGAEAVPVE IPVVRRQTPA SRNARATPFR GPWTEEEDEL LRRLVDEHGE HKWATISKHL 120 PGRIGKQCRE RWTNHVRPGI KKDHIWTEAD DILLIDAHKI HGNRWSTIAR CLPGRSENAI 180 KNHWNATKRS LKSKRRLKKK TSQQAAPGQF TLLEEYIRDK TMADENVAPP SPSSGLGYDG 240 QVFPNAAAML AVSTPPGMGQ YLHPADAAGS SSQAGMMNLR APLPDLNAAY SGEMLERYYY 300 PASFPTYSNN NLLHHGPEPA FPQMFSAQAR MLAACTNLKL FPLPQYLGGG YYGGETGSSS 360 AGGSSDQDED VVQMASREFQ TSDDETTLDL TGFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-39 | 90 | 189 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 9e-39 | 90 | 189 | 4 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163981.1 | 0.0 | protein rough sheath 2-like | ||||
TrEMBL | A0A3B6FSF0 | 0.0 | A0A3B6FSF0_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_14401.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 5e-35 | myb domain protein 118 |
Publications ? help Back to Top | |||
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