PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF011300020CFD_t1

Common Name

TRAES_3BF011300020CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 731aa MW: 76881.9 Da PI: 7.352

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF011300020CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	541	587	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+++P +K++Ka+ L ++++++k+L TRAES3BF011300020CFD_t1 541 RSHSEAERRRRERINAHLATLRSMVPCT-----GKMDKAALLAEVINHVKKL 587 68***********************9.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.880	2.6E-59	31	224	IPR029062	Class I glutamine amidotransferase-like
Pfam	PF01965	2.8E-41	32	203	IPR002818	DJ-1/PfpI
SuperFamily	SSF52317	1.9E-48	32	223	IPR029062	Class I glutamine amidotransferase-like
TIGRFAMs	TIGR01383	1.6E-65	33	215	IPR006287	Protein deglycase DJ-1
CDD	cd03135	3.97E-55	34	204	No hit	No description
Gene3D	G3DSA:3.40.50.880	2.0E-52	243	415	IPR029062	Class I glutamine amidotransferase-like
Pfam	PF01965	1.2E-41	244	407	IPR002818	DJ-1/PfpI
SuperFamily	SSF52317	2.93E-44	244	416	IPR029062	Class I glutamine amidotransferase-like
TIGRFAMs	TIGR01383	2.3E-51	244	415	IPR006287	Protein deglycase DJ-1
CDD	cd03135	2.64E-61	245	409	No hit	No description
PROSITE profile	PS50888	16.088	538	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-13	541	593	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-10	541	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-14	541	590	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	544	593	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00103	551	590	No hit	No description
Gene3D	G3DSA:3.30.1150.10	2.9E-4	637	703	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006517	Biological Process	protein deglycosylation
GO:0030091	Biological Process	protein repair
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MAAAASSLAR RAVSCRRLLL SRAFAAAARP AKRVLVPVAA GTEPVEAAAT ADVLNRAGAR 60 VTVATVASAP AGDEGLLVEA AYGVKLVADA RVADLEGEDF DLIALPGGMP GSTNLRECKV 120 LERMVKMHAE KGELYGAICA APAVTLAHWG MLKGLKATCY PSFMEKFTAE VIPVNSRVVV 180 DRNVVTSQGP GTAIEFALAL VEQLYDKEKM EEVAGPLYVR PQHGAEYTIE ELNSVEWKCS 240 GTPQVLVPVA NGSEEIEALN LIDVLRRAGA NVTVASVEDT LQIVTRRHKF NLIADMMLDE 300 AAKMEFDLIV MPGGLSGAQK FASTNKLVDL LKKQAGSGKP YGAICASPAH VLEPHGLLKG 360 KKVTAFPPMA HLLTDQSLCE NRVVIDGNLI TSRAPGTATE FALAIVEKLF GREKACVLPS 420 CGNDAEMIDG NDSTNGSTDL LAAASQNSQA LCTLSISRPL ALWDEMNSGP FSGAVGLYDG 480 FYGGFGGGHG HEHGFGQHLG ASTSSSVLLD GGTGELAAAA AADVPKRKGG AREEKAATAL 540 RSHSEAERRR RERINAHLAT LRSMVPCTGK MDKAALLAEV INHVKKLKSE AARVGRHCPV 600 PSGADEVTVE VVQQPQESPQ HSRAGAAFLV KATLSCGDGC ADLFADVRRA LQPLAPRVVG 660 SEVTTLGGRV RITVAMLREG AVTAASVRRA LDSVLDRVAS AAAAFEFSPR DSLLASKRRR 720 VSTFDSSSSS S

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MAAAASSLAR RAVSCRRLLL SRAFAAAARP AKRVLVPVAA GTEPVEAAAT ADVLNRAGAR  60
VTVATVASAP AGDEGLLVEA AYGVKLVADA RVADLEGEDF DLIALPGGMP GSTNLRECKV  120
LERMVKMHAE KGELYGAICA APAVTLAHWG MLKGLKATCY PSFMEKFTAE VIPVNSRVVV  180
DRNVVTSQGP GTAIEFALAL VEQLYDKEKM EEVAGPLYVR PQHGAEYTIE ELNSVEWKCS  240
GTPQVLVPVA NGSEEIEALN LIDVLRRAGA NVTVASVEDT LQIVTRRHKF NLIADMMLDE  300
AAKMEFDLIV MPGGLSGAQK FASTNKLVDL LKKQAGSGKP YGAICASPAH VLEPHGLLKG  360
KKVTAFPPMA HLLTDQSLCE NRVVIDGNLI TSRAPGTATE FALAIVEKLF GREKACVLPS  420
CGNDAEMIDG NDSTNGSTDL LAAASQNSQA LCTLSISRPL ALWDEMNSGP FSGAVGLYDG  480
FYGGFGGGHG HEHGFGQHLG ASTSSSVLLD GGTGELAAAA AADVPKRKGG AREEKAATAL  540
RSHSEAERRR RERINAHLAT LRSMVPCTGK MDKAALLAEV INHVKKLKSE AARVGRHCPV  600
PSGADEVTVE VVQQPQESPQ HSRAGAAFLV KATLSCGDGC ADLFADVRRA LQPLAPRVVG  660
SEVTTLGGRV RITVAMLREG AVTAASVRRA LDSVLDRVAS AAAAFEFSPR DSLLASKRRR  720
VSTFDSSSSS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xll_A	8e-42	31	415	5	184	DJ-1 family protein
4xll_B	8e-42	31	415	5	184	DJ-1 family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	546	551	ERRRRE
2	716	720	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in oxidative stress response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355256	0.0	AK355256.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018C21.
GenBank	AK358949	0.0	AK358949.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1086D17.
GenBank	AK360945	0.0	AK360945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128P16.
GenBank	AK366284	0.0	AK366284.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041K20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189859.1	0.0	protein DJ-1 homolog B-like
Swissprot	Q9MAH3	1e-155	DJ1B_ARATH; Protein DJ-1 homolog B
TrEMBL	A0A077RR46	0.0	A0A077RR46_WHEAT; Uncharacterized protein
STRING	BRADI2G07040.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	5e-21	basic helix-loop-helix 32

Publications ? help Back to Top
Xu XM, et al. The Arabidopsis DJ-1a protein confers stress protection through cytosolic SOD activation. J. Cell. Sci., 2010. 123(Pt 10): p. 1644-51 [PMID:20406884] Lin J, et al. A plant DJ-1 homolog is essential for Arabidopsis thaliana chloroplast development. PLoS ONE, 2011. 6(8): p. e23731 [PMID:21886817] Seo KH,Zhuang N,Cha JY,Son D,Lee KH Crystallization and preliminary X-ray data analysis of a DJ-1 homologue from Arabidopsis thaliana (AtDJ-1D). Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2012. 68(Pt 1): p. 101-4 [PMID:22232184] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kwon K, et al. Novel glyoxalases from Arabidopsis thaliana. FEBS J., 2013. 280(14): p. 3328-39 [PMID:23651081]