PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF009600010CFD_t1
Common NameTRAES_3BF009600010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 386aa    MW: 41289.9 Da    PI: 6.3691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF009600010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000332753121254
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              R +++ +++  L++l+ +      +K + a++L +A eYIk L
  TRAES3BF009600010CFD_t1 275 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 312
                              677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-7273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-10273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-4273317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MADEWWSGSQ RSHGTSACSA APLMDTGHAA TCGWTSPAAE STSSITFQDP HRSSSTITHP  60
PSSDAASSLG DVHMDWTHAF LSGRSDASFQ AVLQDDMPAS MTTRPLFRPH QPAVDEAVMS  120
NPFRDMSHSF SLLDQVPAAS SPYGTAPLQG MFDTTGASHN VSVLGECQSS TSYDGTAGMQ  180
LNQAATQMLG GGAQLQYLSG SGSYMPFGGA PLSSQLLLQA LQPKTSYSSS SNSLMAKSAE  240
HACSPPARRS EPDSPAAAKR PRIEAPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  300
VLHEANEYIK FLHDQVASLT YPYLKNVNPL QQFQQKGSEN AKDDGGEPKK DLRSRGLCLV  360
PVATTYTVAS ETVPEFWYPT FGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181117.10.0transcription factor UNE12-like isoform X2
TrEMBLA0A077S3Y60.0A0A077S3Y6_WHEAT; Uncharacterized protein
STRINGTraes_3B_FE130D0C9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-46bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]