PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF009000040CFD_t1
Common NameTRAES_3BF009000040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18481.4 Da    PI: 9.7389
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF009000040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.2e-261160251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             rie+ + rqv fskRr g++KKA+EL vLCdaev++++fs+ g+lyey+s
  TRAES3BF009000040CFD_t1 11 RIEDRTSRQVRFSKRRSGLFKKAFELAVLCDAEVSLLVFSPAGRLYEYAS 60
                             8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.464262IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-32261IPR002100Transcription factor, MADS-box
CDDcd002654.38E-38379No hitNo description
PRINTSPR004041.7E-27424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-29478IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241158IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MARRGRVELR RIEDRTSRQV RFSKRRSGLF KKAFELAVLC DAEVSLLVFS PAGRLYEYAS  60
SSIEGTYDRY QAFAGAGKDV NEPGASNNND GDPSNIQSRL EEITTWSLQN NADDSDANEL  120
EKLEKLLTDA LKNTKSKKML AQRNSGAGTS ASGENSSRPR GQKEGRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-19489280Myocyte-specific enhancer factor 2A
3kov_B7e-19489280Myocyte-specific enhancer factor 2A
3kov_I7e-19489280Myocyte-specific enhancer factor 2A
3kov_J7e-19489280Myocyte-specific enhancer factor 2A
3p57_A7e-19489280Myocyte-specific enhancer factor 2A
3p57_B7e-19489280Myocyte-specific enhancer factor 2A
3p57_C7e-19489280Myocyte-specific enhancer factor 2A
3p57_D7e-19489280Myocyte-specific enhancer factor 2A
3p57_I7e-19489280Myocyte-specific enhancer factor 2A
3p57_J7e-19489280Myocyte-specific enhancer factor 2A
5f28_A8e-19489381MEF2C
5f28_B8e-19489381MEF2C
5f28_C8e-19489381MEF2C
5f28_D8e-19489381MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123660.0DQ512366.1 Triticum aestivum MADS-box transcription factor TaAGL33 (AGL33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147090.11e-106MADS-box transcription factor 51-like
SwissprotQ9XJ612e-79MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A077RZD61e-118A0A077RZD6_WHEAT; Uncharacterized protein
TrEMBLA0A446QAZ91e-118A0A446QAZ9_TRITD; Uncharacterized protein
STRINGTraes_4DL_C4CB3D5AF.12e-91(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.12e-32AGAMOUS-like 79
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]