PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF007300580CFD_t1
Common NameTRAES_3BF007300580CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 758aa    MW: 83510.2 Da    PI: 6.5635
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF007300580CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.6e-22177277198
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+ltpsd++++g +++ +++a+e+       ++ + +++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +
  TRAES3BF007300580CFD_t1 177 FCKILTPSDTSTHGGFSVLRRHANEClppldmAMP-TPTQEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAF 261
                              99****************************97444.44569********************************************* PP

                              EEEE-SSSEE..EEEEE- CS
                       B3  81 vFkldgrsefelvvkvfr 98 
                              v    +++++e +v+v+r
  TRAES3BF007300580CFD_t1 262 VYL--RSETGEQRVGVRR 277
                              999..4477778999997 PP
2Auxin_resp97.32.3e-32303384183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha++t+s+F v+Y+Pr s+s+++v+v+k+++a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  dl+p +W++S+W+sLk
  TRAES3BF007300580CFD_t1 303 ASHALKTNSIFVVYYRPRLSQSQYIVSVNKYLQASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDLSP-QWSGSEWKSLK 384
                              789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-36165306IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-35170292IPR015300DNA-binding pseudobarrel domain
CDDcd100175.53E-17177277No hitNo description
PROSITE profilePS5086311.279177279IPR003340B3 DNA binding domain
SMARTSM010198.7E-18177279IPR003340B3 DNA binding domain
PfamPF023624.3E-20177277IPR003340B3 DNA binding domain
PfamPF065077.1E-28303384IPR010525Auxin response factor
PfamPF023096.8E-7639692IPR033389AUX/IAA domain
PROSITE profilePS5174523.355654734IPR000270PB1 domain
SuperFamilySSF542774.46E-9655727No hitNo description
Gene3DG3DSA:3.10.20.2409.3E-4656715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGRAQQQTLT QGEHHPVPRP DQLLLPPSLS PRPHSSFPPG EDRTAEPVHH QPTATRVAMA  60
QPGRGRDPEL FAELWRACAG PLVEVPQRGE RVFYFLQGHL EQLQEPTDSA LLAEQIKMFQ  120
VPYKILCKVV NVELKAEAET DEVYAQITLQ PESDQDNLPL ICDPILPETP RPVVHTFCKI  180
LTPSDTSTHG GFSVLRRHAN ECLPPLDMAM PTPTQEIISK DLHGSEWRFK HIYRGQPRRH  240
LLTTGWSTFV TSKKLMAGDA FVYLRSETGE QRVGVRRLVQ KQSTMPASVI SSQSMHLGVL  300
ASASHALKTN SIFVVYYRPR LSQSQYIVSV NKYLQASKTG FTVGMRFRMN FEAEDVPVKK  360
FFGTIVGDGD LSPQWSGSEW KSLKVQWDDS VAICNGPERV SPWEIDSSDG SSPAISALLQ  420
SSAKNKRPRE ANENFDLPSQ EPTQEFWLSG MTQQHERTYV GSSDPNRISG YHQILWPSSE  480
PAGYGAMSSS SVCQTPLGLG DGWPKDFNPS SQGVSPTLSE ITQKLNRVAS SEGRAPPPWA  540
TALCGGYRAE EPTSKLSCNT TLPLPEQVAP YLPKVAEKAK EPGVVRLFGV NLMENTNNAA  600
APTAGNASAG AGETSARVAG SVEGSGQLSA FSKVTKVANE SPREIQSQQS NIGRNRVKVQ  660
MHGNAVGRAV DLASLDGYEG LTSELEQMFE IKDIKQNFKV AFTDNEGDTM KVGDDPWMEF  720
CRMVRKIVIY PIEDDKNMDP RQRSVLAAAP DPDPKANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-142544063353Auxin response factor 1
4ldw_A1e-142544063353Auxin response factor 1
4ldw_B1e-142544063353Auxin response factor 1
4ldx_A1e-142544063353Auxin response factor 1
4ldx_B1e-142544063353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A446PL570.0A0A446PL57_TRITD; Auxin response factor
TrEMBLW5CW590.0W5CW59_WHEAT; Auxin response factor
STRINGTraes_3B_60D375C4E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-165auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]