PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF002300110CFD_t1 | ||||||||
Common Name | TRAES_3BF002300110CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13981.9 Da PI: 10.1104 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.2e-14 | 24 | 111 | 11 | 95 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++ l +p +f ++hg +++ ++ +g++W+v l++ r +++ + l+ GW++F +ngL +gD++ F+l+++ TRAES3BF002300110CFD_t1 24 TSWEKLNVPVEFSQSHGFTEKGR--VV-LRMRGQQWSVCLKHsnR--RKGnartrTALRYGWNRFRVDNGLHVGDICFFQLVHDaG 104 4445699*********8876553..44.45599*****9988652..333346779*************************99877 PP EE..EEE CS B3 89 efelvvk 95 + +v++ TRAES3BF002300110CFD_t1 105 GDDPVLS 111 7777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.802 | 14 | 118 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-15 | 16 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 16 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.9E-5 | 16 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 20 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.88E-12 | 28 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MAQQLRDSPD LAGFEFYKLM ASGTSWEKLN VPVEFSQSHG FTEKGRVVLR MRGQQWSVCL 60 KHSNRRKGNA RTRTALRYGW NRFRVDNGLH VGDICFFQLV HDAGGDDPVL SVEVRKADGT 120 IVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-159 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172157.1 | 4e-60 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 3e-29 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A077S1M2 | 4e-87 | A0A077S1M2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q8W4 | 4e-87 | A0A446Q8W4_TRITD; Uncharacterized protein | ||||
STRING | EMT23566 | 3e-60 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 7e-10 | B3 family protein |
Publications ? help Back to Top | |||
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