PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF002200030CFD_t1 | ||||||||
Common Name | TRAES_3BF002200030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 24598.9 Da PI: 9.6538 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.4 | 1.4e-09 | 52 | 78 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ + +tG C y d C+FaHg+ TRAES3BF002200030CFD_t1 52 YKTRLCDKYEATGRCVYEDGCTFAHGR 78 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-15 | 48 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-9 | 50 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.001 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 52 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEGECPAAPT RRWAENVIVL SSGRPPRSEE AAVVAGQGQH QRTDAPPEKL YYKTRLCDKY 60 EATGRCVYED GCTFAHGRAE LRPPVPPHAH AVWRRPPDQE HGGRIVYGGG KACHNFRDRG 120 HFGDKLASPH AAAPAPPGHP IRITGDQKLL ADERRSATPP AMPPAARRYA ALGPARAFPP 180 VPAPATRDRL RQMPEEDGGK KPNRLMLMSL RKTSGIYGDW PEQC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | GGRIVYGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186974.1 | 1e-121 | zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | A0A077RQK8 | 1e-162 | A0A077RQK8_WHEAT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-08 | C3H family protein |
Publications ? help Back to Top | |||
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