PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF001100080CFD_t1
Common NameTRAES_3BF001100080CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 796aa    MW: 89098.7 Da    PI: 6.483
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF001100080CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.6e-23126227199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD 
  TRAES3BF001100080CFD_t1 126 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 209
                              99*****************************7555544..58******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              ++F   + +++el+v+v+r+
  TRAES3BF001100080CFD_t1 210 FIFL--RGESGELRVGVRRA 227
                              ****..449999*****996 PP
2Auxin_resp111.29.9e-37252333183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  TRAES3BF001100080CFD_t1 252 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 333
                              89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-39119255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-39119241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-19124226No hitNo description
PROSITE profilePS5086311.702126228IPR003340B3 DNA binding domain
SMARTSM010199.5E-22126228IPR003340B3 DNA binding domain
PfamPF023629.5E-21126227IPR003340B3 DNA binding domain
PfamPF065071.2E-33252333IPR010525Auxin response factor
PfamPF023092.0E-12659759IPR033389AUX/IAA domain
SuperFamilySSF542771.57E-12669752No hitNo description
PROSITE profilePS5174524.728675768IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MPPAAMAPPQ APSAGDPLYD ELWHACAGPL VTVPRVGDLV FYFPQGHIEQ VEASMNQVAG  60
NQMRLYDLPS KLLCRVINVE LKAEADTDEV YAQVMLMPEP EQNEMAVDKS TSTTGATPPR  120
PAVRSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMTQS PPTQELVAKD LHGMDWRFRH  180
IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRAMRQ LPNVPSSVIS  240
SHSMHLGVLA TAWHAINTKS MFTVYYKPRT SPSEFIIPYD QYMESVKNNY SIGMRFRMRF  300
EGEEAPEQRF TGTIVGSENL DQLWPESNWR SLKVRWDEPS TIPRPDRVSP WKIEPASSPP  360
VNPLPLSRVK RPRPNVPPVS PESSVLTKEG ATKIDMDSAQ AQQRNQNNMV LQGQEHMTLR  420
TNNLTASNDS DATVQKPMMW SPSPNIGKNH ASAFQQRPSM DNWMQLGRCD ASSGAQSFGD  480
SQGFFMQTFD EAPNRHGSFK NQFQDHSSAR HFSDPYTKMQ TEANEFHFWN SQSTVYGNPR  540
DQSQGFRFEE HPSNWLRQQQ FSPVEQPRVI RPHASIAPVD LEKAREGSGF KIFGFKVDTT  600
STPSNHLSSS MAAIHEPVLQ IQASASLTQL QHTHADCIPE LSVSTAGTTE NEKSIQQAPH  660
SSKDVQSKSH GASTRSCTKV HKQGVALGRS VDLSKFGDYD ELTAELDRMF EFDGELMSSN  720
KDWQIVYTDP EGDMMLVGDD PWEEFCNIVR KIFIYTKEEV QKMNSKSSAP RKEEGSGDAD  780
GANEKAHLAT SSHLDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-1671635817357Auxin response factor 1
4ldx_B1e-1671635817357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648520.0AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02.
GenBankAK3687850.0AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198715.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A077S7790.0A0A077S779_WHEAT; Auxin response factor
STRINGTraes_3B_615705174.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]