PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.J017100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27005.3 Da PI: 4.8274 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.4e-17 | 25 | 77 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV ++ +grW+A+I ng +k+ +lg fgt eeAa+a++ a+++l+g+ Sevir.J017100.1.p 25 SEYRGVAKHHHNGRWEARIGY--ANG-KKYLYLGIFGTQEEAARAYDLAALELRGH 77 569***************644..366.8**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.95E-21 | 25 | 86 | No hit | No description |
SuperFamily | SSF54171 | 3.92E-17 | 25 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-25 | 26 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 26 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 26 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-5 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-5 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MQRMTREAYL ATLRRRSSCF SRGASEYRGV AKHHHNGRWE ARIGYANGKK YLYLGIFGTQ 60 EEAARAYDLA ALELRGHAAI TNFDISSYAD YLQPPPVSKA QARSALKPKA EPVDEAPLLP 120 TKTATGWTTP LLTPKPEPED EEVEPLVAAL PPGLVLRDVD HAIAEMPPGP VLRDADDVDH 180 AIAEILPALG MDPADFEARY PARALGWLPD DDHHQLRALP LPDAGRFEDD IETLFDAPGS 240 AGPGQGE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.J017100.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949353 | 2e-50 | EU949353.1 Zea mays clone 402937 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970326.2 | 1e-178 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A368RCF7 | 1e-175 | A0A368RCF7_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XQN5 | 1e-176 | K3XQN5_SETIT; Uncharacterized protein | ||||
STRING | Si004222m | 1e-177 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13401 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.J017100.1.p |