PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.J007800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 28773.5 Da PI: 10.6459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.7 | 1.6e-09 | 34 | 82 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y+GV + + r++A ++ + +k ++lg++gta eAa a++aa+++ Sevir.J007800.1.p 34 TRYRGVQMRGR--RYAATLWNpF----LKKAIRLGSYGTAVEAAYAYDAAARSVL 82 58****98775..9****99944....35**********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-5 | 34 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.746 | 35 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-11 | 35 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-13 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-9 | 35 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MPGPGRVVEL ARQAAAAARA DGRAAREAAV LPATRYRGVQ MRGRRYAATL WNPFLKKAIR 60 LGSYGTAVEA AYAYDAAARS VLGRWARPNF PELSAAPAAR EVXAADLARA RRAAEPARQQ 120 QQAPRRQAPL IRCWVPAPAG AAAQHQERVA PPVFAFRREA APQYMRLHYR PGSAATGGGL 180 YAVAFVPGVP DLNDPVPDTS SSELSSTESG SAPAAPNRRE LPHLPALAVE PDQSMEYVTT 240 PSGGTPTTPA RLIAISIATT ACYPTPWIFL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.J007800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967157.1 | 1e-133 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | K3Y120 | 0.0 | K3Y120_SETIT; Uncharacterized protein | ||||
STRING | Si007882m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17311 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.J007800.1.p |