PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G567400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 678aa MW: 75281.9 Da PI: 6.1289

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G567400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.1	6.8e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd Sevir.9G567400.1.p 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKD 95 79**************************.99**********95334455777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Sevir.9G567400.1.p 96 RKVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 *.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.601	6	156	IPR003441	NAC domain
Pfam	PF02365	9.7E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM 180 ANSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMDSMHGG FGMQMSTAHE DGKWMQFLSE 240 DAFNATNPFF MNPGSSSFSC LPSKVDVALE CARLQHRLSL PPLEVEDFPQ DVSLDTKTNI 300 LRSNPNEVDI LQEFLSVASA SQELINGTSS SYPAEIWPGA GTSSASTHYI NELSSLVELG 360 VKAKEEADNF YNMGCIGTSA GFASKSVHVD EPVRLVEIAD MEELKEEKKQ VENLRGVRLH 420 NNDLGEIVVE GDESGNPTEC ITQYPISETA DNSGEAGHLT DPTDAGGLDT APIFSQSQPD 480 DFAIGFDDVN PNASFDLYEK VDVKHGLFVS RVGAAKTFFH RVEPSKKVSF HLNPLASDVS 540 RAIEKFHFPI SVTTKVSGRV SIFSKFKALI RDKFLVTKPS SYQRSLGSKE TAAVSELLQI 600 VSLLLTPKEV TGPTTTEQEL VKKKAKKVMK PGSGCEGSDA WLVPLSKRSK GISSMFFSGK 660 WAFLTSALAI RTPGCNH*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM  180
ANSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMDSMHGG FGMQMSTAHE DGKWMQFLSE  240
DAFNATNPFF MNPGSSSFSC LPSKVDVALE CARLQHRLSL PPLEVEDFPQ DVSLDTKTNI  300
LRSNPNEVDI LQEFLSVASA SQELINGTSS SYPAEIWPGA GTSSASTHYI NELSSLVELG  360
VKAKEEADNF YNMGCIGTSA GFASKSVHVD EPVRLVEIAD MEELKEEKKQ VENLRGVRLH  420
NNDLGEIVVE GDESGNPTEC ITQYPISETA DNSGEAGHLT DPTDAGGLDT APIFSQSQPD  480
DFAIGFDDVN PNASFDLYEK VDVKHGLFVS RVGAAKTFFH RVEPSKKVSF HLNPLASDVS  540
RAIEKFHFPI SVTTKVSGRV SIFSKFKALI RDKFLVTKPS SYQRSLGSKE TAAVSELLQI  600
VSLLLTPKEV TGPTTTEQEL VKKKAKKVMK PGSGCEGSDA WLVPLSKRSK GISSMFFSGK  660
WAFLTSALAI RTPGCNH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-55	1	162	15	174	NAC domain-containing protein 19
4dul_A	1e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G567400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468623.1	0.0	uncharacterized protein LOC8085734
TrEMBL	K4A6N6	0.0	K4A6N6_SETIT; Uncharacterized protein
STRING	Si034541m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-133	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Sevir.9G567400.1.p