PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G564100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TALE | ||||||||
Protein Properties | Length: 621aa MW: 65582.7 Da PI: 6.8507 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 362 | 399 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Sevir.9G564100.1.p 362 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 399 664459******************************88 PP | |||||||
2 | BELL | 82.2 | 6.4e-27 | 226 | 294 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq+ k kL +leeVd+rY++y+e ++ +++ Feavag +a+ Yt+lA+++iSrhFr+L+d i+ q+ Sevir.9G564100.1.p 226 ELQRLKDKLYIMLEEVDRRYRRYCELMRSLAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGIVAQL 294 89999*************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-43 | 149 | 292 | IPR006563 | POX domain |
Pfam | PF07526 | 9.7E-43 | 155 | 290 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 340 | 403 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.97E-12 | 343 | 404 | No hit | No description |
SMART | SM00389 | 6.6E-9 | 343 | 407 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-17 | 344 | 410 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-28 | 346 | 409 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 360 | 399 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MAHDPNLGFA DYFSAAADAT AMEEGAPELY GLHADMEFLG SMRGGLAAMP AAAHGHGHSK 60 AVLDDAGPNG GSANAATMQF LSAAGHHHQQ QPSQAPLSLS LCRPDGGGVG VTLHEHLSGS 120 SRHHQQQHPA PAAWMQNDYT APTPQGPQHA GAWHLRSSKF LVPAQQLLQE FCSLPVDSAA 180 ASNKRAKAVT AKQPSSQQQQ EDGGEGSSSS ASWAPSPQIQ AMDALELQRL KDKLYIMLEE 240 VDRRYRRYCE LMRSLAGGFE AVAGERAAAA YTALASRTIS RHFRSLRDGI VAQLQAARKA 300 LGEKDVSVPG MTRGDTPRLR VLDQCIRQQK ALTQAGMMES HPWRPQRGLP ERAVTILRAW 360 LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYV EEMKDGQLDD 420 GGGSGGQHSV NPNPSSSHAS EAHGGGAAGG REVADGGENG VDRKPTRAQL MHDTGSLASV 480 VNIGGAGGGV SRLANFGIMD HLDFDAYGGG DQHNHQQAGG FGGVSLTLGL QQHDFHDGGG 540 VNIAFGAPPS SAHHHGGGGA GYLFAAVGGQ QMDGGVHQGH GHHVQFGAAG GIDGEAPPHA 600 GQDHYRSLGA GFHLLRDLAG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 4e-17 | 349 | 406 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-17 | 349 | 406 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 3e-17 | 349 | 407 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-17 | 349 | 407 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G564100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957962 | 0.0 | EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985907.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_012698473.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_012698474.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | K4A764 | 0.0 | K4A764_SETIT; Uncharacterized protein | ||||
STRING | Si034720m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 4e-84 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G564100.1.p |