PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G561500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 424aa    MW: 45325.5 Da    PI: 6.5914
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G561500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10274326557
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         kr +r   NR +A rs +RK  +i+eLe+kv+ L++e ++L  +l  l+  +a
  Sevir.9G561500.1.p 274 KRVKRVLANRQSAARSKERKMRYIAELEQKVQILQTEATTLSAQLTLLQRDSA 326
                         999*****************************************999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-16270334IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.553272335IPR004827Basic-leucine zipper domain
PfamPF001702.8E-9274326IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-10274326No hitNo description
SuperFamilySSF579593.8E-11274324No hitNo description
CDDcd147035.21E-23275326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNGIVGDPHA AAMMMQQHVQ QQLGVSLPMA TSSFAPDAAS AKPRPPGLPP TPPPASFAGH  60
RPSPGDVCMD IDPAARSNKA HRRSRSDVPF GYFPPATSHL PPPKVEAGWS HHGVGGGGDA  120
DDLFNAYLNL EGLDGLNSSD ERHDDGDSRG SXMKTNGADS SENESEECAA DSRAAGIXLW  180
GXAXAAGDRR EGLKRSAAGD PAAAAAPMAR HARSLSMDSL IGKLNFSAGA AANGVMPGPN  240
RFSLXFGSGE FTPVEMKKIM ADEKLAEMAL ADPKRVKRVL ANRQSAARSK ERKMRYIAEL  300
EQKVQILQTE ATTLSAQLTL LQRDSAGIAT QNNELKFRLQ AMEQQAQLRD ALNEALTAEV  360
QRLKLATAEL GDSCSSNNLA QQLQLNAQDQ MFQLHQQQAT PIPFYQLQQA QQNGVGKNHE  420
SKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G561500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715090.0EU971509.1 Zea mays clone 366380 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985885.10.0transcription factor RF2b
TrEMBLK4AAD40.0K4AAD4_SETIT; Uncharacterized protein
STRINGSi035841m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35363576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-63bZIP family protein